HL_4V7E_005

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V7E|1|Aa|A|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1814

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4V7E|1|Aa|C|192
4V7E|1|Aa|U|193
4V7E|1|Aa|G|194
4V7E|1|Aa|G|195
4V7E|1|Aa|A|196
4V7E|1|Aa|A|197
4V7E|1|Aa|A|198
4V7E|1|Aa|G|199

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24

Chain Ce

60S ribosomal protein L32E