HL_4V7E_013

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUCCGCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_013 not in the Motif Atlas

Geometric match to HL_4LFB_007

Geometric discrepancy: 0.2821

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V7E|1|Aa|C|536
4V7E|1|Aa|U|537
4V7E|1|Aa|C|538
4V7E|1|Aa|C|539
4V7E|1|Aa|G|540
4V7E|1|Aa|C|541
4V7E|1|Aa|G|542

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CM

60S ribosomal protein L14E

Chain CS

60S ribosomal protein L20