HL_4V7E_015

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_015 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1717

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V7E|1|Aa|C|596
4V7E|1|Aa|C|597
4V7E|1|Aa|U|598
4V7E|1|Aa|C|599
4V7E|1|Aa|G|600
4V7E|1|Aa|G|601

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CE

60S ribosomal protein L6E