HL_4V7E_018

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAAGGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_018 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3645

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V7E|1|Aa|C|710
4V7E|1|Aa|A|711
4V7E|1|Aa|A|712
4V7E|1|Aa|G|713
4V7E|1|Aa|G|714
4V7E|1|Aa|A|715
4V7E|1|Aa|A|716
4V7E|1|Aa|G|717

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13E

Chain CQ

60S ribosomal protein L18E

Chain Ca

60S ribosomal protein L15