HL_4V7E_025

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGCAACG

Length

7 nucleotides

Bulged bases

4V7E|1|Aa|C|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_025 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.3578

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7E|1|Aa|C|1027
4V7E|1|Aa|G|1028
4V7E|1|Aa|C|1029
4V7E|1|Aa|A|1030
4V7E|1|Aa|A|1031
4V7E|1|Aa|C|1032
4V7E|1|Aa|G|1033

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain BP

40S ribosomal protein S19

Chain BS

40S ribosomal protein S13

Chain CJ

60S ribosomal protein L5