HL_4V7E_032

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_032 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.1085

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7E|1|Aa|C|1406
4V7E|1|Aa|G|1407
4V7E|1|Aa|C|1408
4V7E|1|Aa|G|1409
4V7E|1|Aa|A|1410
4V7E|1|Aa|G|1411

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ce

60S ribosomal protein L32E