HL_4V7E_033

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_033 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1268

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V7E|1|Aa|A|1465
4V7E|1|Aa|U|1466
4V7E|1|Aa|G|1467
4V7E|1|Aa|A|1468
4V7E|1|Aa|G|1469
4V7E|1|Aa|A|1470
4V7E|1|Aa|A|1471
4V7E|1|Aa|C|1472
4V7E|1|Aa|U|1473

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CP

60S ribosomal protein L22

Chain CR

60S ribosomal protein L19E

Chain Cd

60S ribosomal protein L31E