HL_4V7E_039

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

4V7E|1|Aa|U|1684

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_039 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.3048

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7E|1|Aa|G|1677
4V7E|1|Aa|U|1678
4V7E|1|Aa|U|1679
4V7E|1|Aa|A|1680
4V7E|1|Aa|U|1681
4V7E|1|Aa|C|1682
4V7E|1|Aa|U|1683
4V7E|1|Aa|U|1684
4V7E|1|Aa|U|1685

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19E

Chain CU

60S ribosomal protein L22E