HL_4V7E_052

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

4V7E|1|Aa|A|2371, 4V7E|1|Aa|A|2372, 4V7E|1|Aa|C|2373

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_052 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1246

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7E|1|Aa|G|2368
4V7E|1|Aa|G|2369
4V7E|1|Aa|G|2370
4V7E|1|Aa|A|2371
4V7E|1|Aa|A|2372
4V7E|1|Aa|C|2373
4V7E|1|Aa|G|2374
4V7E|1|Aa|G|2375
4V7E|1|Aa|G|2376
4V7E|1|Aa|C|2377

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CO

60S ribosomal protein L13

Chain Ce

60S ribosomal protein L32E