HL_4V7E_054

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGCAUGCCCCUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_054 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1907

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V7E|1|Aa|G|2538
4V7E|1|Aa|G|2539
4V7E|1|Aa|C|2540
4V7E|1|Aa|A|2541
4V7E|1|Aa|U|2542
4V7E|1|Aa|G|2543
4V7E|1|Aa|C|2544
4V7E|1|Aa|C|2545
4V7E|1|Aa|C|2546
4V7E|1|Aa|C|2547
4V7E|1|Aa|U|2548
4V7E|1|Aa|C|2549

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S1E

Chain CG

60S ribosomal protein L8E