HL_4V7E_056
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 4V7E|1|Aa|G|2621
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7E_056 not in the Motif Atlas
- Geometric match to HL_5TBW_054
- Geometric discrepancy: 0.2266
- The information below is about HL_5TBW_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
4V7E|1|Aa|C|2619
4V7E|1|Aa|U|2620
4V7E|1|Aa|G|2621
4V7E|1|Aa|G|2622
4V7E|1|Aa|G|2623
4V7E|1|Aa|G|2624
4V7E|1|Aa|C|2625
4V7E|1|Aa|G|2626
4V7E|1|Aa|G|2627
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ae
- Transfer RNA; tRNA
- Chain CI
- 60S ribosomal protein L16
- Chain CT
- 60S ribosomal protein L21E
- Chain Cb
- 60S ribosomal protein L29E
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