HL_4V7E_058

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_058 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.2612

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V7E|1|Aa|A|2676
4V7E|1|Aa|A|2677
4V7E|1|Aa|C|2678
4V7E|1|Aa|A|2679
4V7E|1|Aa|G|2680
4V7E|1|Aa|A|2681
4V7E|1|Aa|A|2682
4V7E|1|Aa|A|2683
4V7E|1|Aa|U|2684

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CJ

60S ribosomal protein L5