HL_4V7E_059

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_059 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1234

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

4V7E|1|Aa|C|2696
4V7E|1|Aa|A|2697
4V7E|1|Aa|A|2698
4V7E|1|Aa|A|2699
4V7E|1|Aa|A|2700
4V7E|1|Aa|G|2701
4V7E|1|Aa|G|2702
4V7E|1|Aa|G|2703

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ae

Transfer RNA; tRNA

Chain CI

60S ribosomal protein L16

Chain CT

60S ribosomal protein L21E

Chain Co

60S ribosomal protein L44E