HL_4V7E_066

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_066 not in the Motif Atlas

Homologous match to HL_5TBW_064

Geometric discrepancy: 0.1398

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7E|1|Aa|C|2965
4V7E|1|Aa|G|2966
4V7E|1|Aa|U|2967
4V7E|1|Aa|G|2968
4V7E|1|Aa|A|2969
4V7E|1|Aa|G|2970

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ae

Transfer RNA; tRNA

Chain CA

60S ribosomal protein L2