HL_4V7E_069

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

4V7E|1|Aa|G|3117, 4V7E|1|Aa|C|3121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1907

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V7E|1|Aa|C|3111
4V7E|1|Aa|U|3112
4V7E|1|Aa|G|3113
4V7E|1|Aa|A|3114
4V7E|1|Aa|A|3115
4V7E|1|Aa|C|3116
4V7E|1|Aa|G|3117
4V7E|1|Aa|C|3118
4V7E|1|Aa|C|3119
4V7E|1|Aa|U|3120
4V7E|1|Aa|C|3121
4V7E|1|Aa|U|3122
4V7E|1|Aa|A|3123
4V7E|1|Aa|A|3124
4V7E|1|Aa|G|3125

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CH

60S ribosomal protein L6

Chain CO

60S ribosomal protein L13

Chain Cm

60S ribosomal protein L40E