HL_4V7E_079

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAUCCG

Length

6 nucleotides

Bulged bases

4V7E|1|Ac|U|127, 4V7E|1|Ac|C|128

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_079 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2585

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V7E|1|Ac|C|125
4V7E|1|Ac|A|126
4V7E|1|Ac|U|127
4V7E|1|Ac|C|128
4V7E|1|Ac|C|129
4V7E|1|Ac|G|130

Current chains

Chain Ac

5.8S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA