HL_4V7E_080

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

4V7E|1|Ad|U|9

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_080 not in the Motif Atlas

Homologous match to HL_4V88_186

Geometric discrepancy: 0.1793

The information below is about HL_4V88_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.2

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V7E|1|Ad|G|7
4V7E|1|Ad|U|8
4V7E|1|Ad|U|9
4V7E|1|Ad|G|10
4V7E|1|Ad|A|11
4V7E|1|Ad|U|12
4V7E|1|Ad|C|13
4V7E|1|Ad|C|14
4V7E|1|Ad|U|15
4V7E|1|Ad|G|16
4V7E|1|Ad|C|17

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BC

40S ribosomal protein S5

Chain BX

40S ribosomal protein S12