HL_4V7E_087

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_087 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.154

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V7E|1|Ad|U|372
4V7E|1|Ad|U|373
4V7E|1|Ad|A|374
4V7E|1|Ad|G|375
4V7E|1|Ad|G|376
4V7E|1|Ad|G|377

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BC

40S ribosomal protein S5

Chain BJ

40S ribosomal protein S4

Chain BL

40S ribosomal protein S17

Chain BW

40S ribosomal protein S8