HL_4V7E_095

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGCUCAAAG

Length

9 nucleotides

Bulged bases

4V7E|1|Ad|G|771

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_095 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2657

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V7E|1|Ad|U|770
4V7E|1|Ad|G|771
4V7E|1|Ad|C|772
4V7E|1|Ad|U|773
4V7E|1|Ad|C|774
4V7E|1|Ad|A|775
4V7E|1|Ad|A|776
4V7E|1|Ad|A|777
4V7E|1|Ad|G|778

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BJ

40S ribosomal protein S4

Chain BY

40S ribosomal protein S24E