HL_4V7E_106

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_106 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1766

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7E|1|Ad|A|1300
4V7E|1|Ad|G|1301
4V7E|1|Ad|C|1302
4V7E|1|Ad|G|1303
4V7E|1|Ad|A|1304
4V7E|1|Ad|U|1305

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein S2

Chain BC

40S ribosomal protein S5

Chain BV

40S ribosomal protein S21E