HL_4V7E_108

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCCAUCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_108 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.5653

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

4V7E|1|Ad|G|1363
4V7E|1|Ad|C|1364
4V7E|1|Ad|C|1365
4V7E|1|Ad|A|1366
4V7E|1|Ad|U|1367
4V7E|1|Ad|C|1368
4V7E|1|Ad|C|1369
4V7E|1|Ad|C|1370

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BQ

40S ribosomal protein S9

Chain BT

40S ribosomal protein S19E

Chain BU

40S ribosomal protein S10