HL_4V7E_109

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGUUUAG

Length

7 nucleotides

Bulged bases

4V7E|1|Ad|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_109 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3851

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

4V7E|1|Ad|C|1402
4V7E|1|Ad|G|1403
4V7E|1|Ad|U|1404
4V7E|1|Ad|U|1405
4V7E|1|Ad|U|1406
4V7E|1|Ad|A|1407
4V7E|1|Ad|G|1408

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BR

40S ribosomal protein S17E