HL_4V7E_115

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UAAUGGUCAG

Length

10 nucleotides

Bulged bases

4V7E|1|Ae|G|17, 4V7E|1|Ae|G|18, 4V7E|1|Ae|U|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Ae|U|13
4V7E|1|Ae|A|14
4V7E|1|Ae|A|15
4V7E|1|Ae|U|16
4V7E|1|Ae|G|17
4V7E|1|Ae|G|18
4V7E|1|Ae|U|19
4V7E|1|Ae|C|20
4V7E|1|Ae|A|21
4V7E|1|Ae|G|22

Current chains

Chain Ae

P-site tRNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain CJ

60S ribosomal protein L5

Chain Co

60S ribosomal protein L44E