HL_4V7E_117
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GUUCAAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7E_117 not in the Motif Atlas
- Homologous match to HL_4LCK_003
- Geometric discrepancy: 0.1342
- The information below is about HL_4LCK_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4V7E|1|Ae|G|52
4V7E|1|Ae|U|53
4V7E|1|Ae|U|54
4V7E|1|Ae|C|55
4V7E|1|Ae|A|56
4V7E|1|Ae|A|57
4V7E|1|Ae|U|58
4V7E|1|Ae|U|59
4V7E|1|Ae|C|60
Current chains
- Chain Ae
- P-site tRNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain CI
- 60S ribosomal protein L16
- Chain CJ
- 60S ribosomal protein L5
- Chain Co
- 60S ribosomal protein L44E
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