Loop HL_4V7E

3D structure

PDB id: 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
Description: Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å

Loop

Sequence: AGAUAAAAGGCUGACGCGGGCUCUGCUCGCUGAUCCGAUGAUUCAU
Length: 46 nucleotides
Bulged bases: 4V7E|1|Ad|A|214, 4V7E|1|Ad|G|229, 4V7E|1|Ad|C|230, 4V7E|1|Ad|U|231, 4V7E|1|Ad|C|235, 4V7E|1|Ad|U|240, 4V7E|1|Ad|U|243, 4V7E|1|Ad|U|252
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V7E|1|Ad|A|210
4V7E|1|Ad|G|211
4V7E|1|Ad|A|212
4V7E|1|Ad|U|213
4V7E|1|Ad|A|214
4V7E|1|Ad|A|215
4V7E|1|Ad|A|216
4V7E|1|Ad|A|217
4V7E|1|Ad|G|218
4V7E|1|Ad|G|219
4V7E|1|Ad|C|220
4V7E|1|Ad|U|221
4V7E|1|Ad|G|222
4V7E|1|Ad|A|223
4V7E|1|Ad|C|224
4V7E|1|Ad|G|225
4V7E|1|Ad|C|226
4V7E|1|Ad|G|227
4V7E|1|Ad|G|228
4V7E|1|Ad|G|229
4V7E|1|Ad|C|230
4V7E|1|Ad|U|231
4V7E|1|Ad|C|232
4V7E|1|Ad|U|233
4V7E|1|Ad|G|234
4V7E|1|Ad|C|235
4V7E|1|Ad|U|236
4V7E|1|Ad|C|237
4V7E|1|Ad|G|238
4V7E|1|Ad|C|239
4V7E|1|Ad|U|240
4V7E|1|Ad|G|241
4V7E|1|Ad|A|242
4V7E|1|Ad|U|243
4V7E|1|Ad|C|244
4V7E|1|Ad|C|245
4V7E|1|Ad|G|246
4V7E|1|Ad|A|247
4V7E|1|Ad|U|248
4V7E|1|Ad|G|249
4V7E|1|Ad|A|250
4V7E|1|Ad|U|251
4V7E|1|Ad|U|252
4V7E|1|Ad|C|253
4V7E|1|Ad|A|254
4V7E|1|Ad|U|255

Current chains

Chain Ad: 18S ribosomal RNA

Nearby chains

Chain BE: 40S ribosomal protein S4E
Chain BG: 40S ribosomal protein S6
Chain BL: 40S ribosomal protein S17

HL_4V7E_125