HL_4V7I_005

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

4V7I|1|A8|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_005 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.2349

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V7I|1|A8|G|123
4V7I|1|A8|G|124
4V7I|1|A8|A|125
4V7I|1|A8|A|126
4V7I|1|A8|A|127
4V7I|1|A8|C|128

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34