4V7I Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V7I_104 | No text annotation | ||
| HL_4V7I_001 | No text annotation | ||
| HL_4V7I_002 | Mini UNCG | ||
| HL_4V7I_003 | Pseudoknot geometry | ||
| HL_4V7I_004 | No text annotation | ||
| HL_4V7I_005 | No text annotation | ||
| HL_4V7I_006 | UNCG | ||
| HL_4V7I_007 | No text annotation | ||
| HL_4V7I_008 | No text annotation | ||
| HL_4V7I_009 | No text annotation | ||
| HL_4V7I_010 | No text annotation | ||
| HL_4V7I_011 | T-loop with 2 stacked bulged bases | ||
| HL_4V7I_012 | No text annotation | ||
| HL_4V7I_013 | T-loop with unstacked turn | ||
| HL_4V7I_014 | No text annotation | ||
| HL_4V7I_107 | No text annotation | ||
| HL_4V7I_015 | No text annotation | ||
| HL_4V7I_016 | GNRA | ||
| HL_4V7I_017 | GNRA | ||
| HL_4V7I_018 | Externally structured | ||
| HL_4V7I_019 | T-loop with 2 stacked bulged bases | ||
| HL_4V7I_020 | No text annotation | ||
| HL_4V7I_021 | GNRA | ||
| HL_4V7I_022 | GNRA | ||
| HL_4V7I_023 | GNRA wlth tandem sheared | ||
| HL_4V7I_024 | No text annotation | ||
| HL_4V7I_025 | No text annotation | ||
| HL_4V7I_026 | No text annotation | ||
| HL_4V7I_027 | No text annotation | ||
| HL_4V7I_028 | GNRA | ||
| HL_4V7I_029 | No text annotation | ||
| HL_4V7I_030 | No text annotation | ||
| HL_4V7I_105 | No text annotation | ||
| HL_4V7I_031 | GNRA wlth tandem sheared | ||
| HL_4V7I_032 | No text annotation | ||
| HL_4V7I_033 | GNRA | ||
| HL_4V7I_034 | T-loop with 2 stacked bulged bases | ||
| HL_4V7I_035 | Pseudoknot geometry with 3' bulge | ||
| HL_4V7I_036 | GNRA | ||
| HL_4V7I_037 | No text annotation | ||
| HL_4V7I_038 | No text annotation | ||
| HL_4V7I_039 | Pseudoknot geometry with 3' bulge | ||
| HL_4V7I_040 | UNCG | ||
| HL_4V7I_041 | Mini UNCG | ||
| HL_4V7I_042 | No text annotation | ||
| HL_4V7I_043 | GNRA | ||
| HL_4V7I_044 | UNCG | ||
| HL_4V7I_045 | No text annotation | ||
| HL_4V7I_046 | No text annotation | ||
| HL_4V7I_047 | No text annotation | ||
| HL_4V7I_048 | GNRA related | ||
| HL_4V7I_049 | GNRA | ||
| HL_4V7I_050 | No text annotation | ||
| HL_4V7I_051 | No text annotation | ||
| HL_4V7I_052 | No text annotation | ||
| HL_4V7I_053 | No text annotation | ||
| HL_4V7I_054 | No text annotation | ||
| HL_4V7I_055 | No text annotation | ||
| HL_4V7I_056 | No text annotation | ||
| HL_4V7I_057 | No text annotation | ||
| HL_4V7I_058 | Pseudoknot geometry | ||
| HL_4V7I_059 | GNRA | ||
| HL_4V7I_060 | GNRA | ||
| HL_4V7I_061 | No text annotation | ||
| HL_4V7I_062 | No text annotation | ||
| HL_4V7I_063 | GNRA variation | ||
| HL_4V7I_064 | tRNA anticodon loop | ||
| HL_4V7I_106 | No text annotation | ||
| HL_4V7I_065 | GNRA | ||
| HL_4V7I_066 | GNRA | ||
| HL_4V7I_067 | Ribsomal LSU H95 | ||
| HL_4V7I_068 | No text annotation | ||
| HL_4V7I_069 | Mini UNCG | ||
| HL_4V7I_070 | No text annotation | ||
| HL_4V7I_071 | GNRA | ||
| HL_4V7I_072 | No text annotation | ||
| HL_4V7I_073 | No text annotation | ||
| HL_4V7I_074 | GNRA | ||
| HL_4V7I_075 | No text annotation | ||
| HL_4V7I_076 | UNCG | ||
| HL_4V7I_077 | GNRA related | ||
| HL_4V7I_078 | GNRA | ||
| HL_4V7I_079 | No text annotation | ||
| HL_4V7I_080 | UNCG | ||
| HL_4V7I_081 | GNRA | ||
| HL_4V7I_082 | UNCG | ||
| HL_4V7I_083 | No text annotation | ||
| HL_4V7I_084 | Externally structured | ||
| HL_4V7I_085 | GNRA-like with tWH | ||
| HL_4V7I_086 | No text annotation | ||
| HL_4V7I_087 | GNRA | ||
| HL_4V7I_088 | No text annotation | ||
| HL_4V7I_089 | No text annotation | ||
| HL_4V7I_090 | GNRA | ||
| HL_4V7I_091 | GNRA | ||
| HL_4V7I_092 | No text annotation | ||
| HL_4V7I_093 | GNRA | ||
| HL_4V7I_094 | No text annotation | ||
| HL_4V7I_095 | GNRA | ||
| HL_4V7I_096 | T-loop related | ||
| HL_4V7I_097 | No text annotation | ||
| HL_4V7I_098 | GNRA | ||
| HL_4V7I_099 | GNRA | ||
| HL_4V7I_100 | T-loop with 3 stacked bulged bases | ||
| HL_4V7I_101 | No text annotation | ||
| HL_4V7I_102 | UNCG | ||
| HL_4V7I_103 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V7I_045 | 1/A8/1043:1051, 1/A8/1108:1112 | Kink-turn | homologous IL_7RQB_042 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V7I_001 | Major groove intercalation | ||
| IL_4V7I_002 | No text annotation | ||
| IL_4V7I_003 | No text annotation | ||
| IL_4V7I_004 | Symmetric double minor groove platform | ||
| IL_4V7I_005 | Bacterial 5S Loop E | ||
| IL_4V7I_006 | Triple sheared with non-canonical cWW | ||
| IL_4V7I_007 | Single bulged A | ||
| IL_4V7I_008 | Minor groove platform with extra cWW | ||
| IL_4V7I_202 | Minor groove platform | ||
| IL_4V7I_009 | No text annotation | ||
| IL_4V7I_187 | Kink-turn | ||
| IL_4V7I_010 | Single stack bend | ||
| IL_4V7I_011 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V7I_012 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V7I_013 | No text annotation | ||
| IL_4V7I_014 | No text annotation | ||
| IL_4V7I_015 | No text annotation | ||
| IL_4V7I_016 | No text annotation | ||
| IL_4V7I_017 | Double sheared | ||
| IL_4V7I_018 | Isolated non-canonical cWW pair | ||
| IL_4V7I_019 | AAA cross-strand stack | ||
| IL_4V7I_020 | Isolated non-canonical cWW pair | ||
| IL_4V7I_021 | tHW-tHW cross-strand stack | ||
| IL_4V7I_022 | Single bulged A | ||
| IL_4V7I_023 | Single bulged G | ||
| IL_4V7I_024 | Triple sheared | ||
| IL_4V7I_025 | Major groove platform | ||
| IL_4V7I_026 | Multiple bulged bases | ||
| IL_4V7I_027 | Single stack bend | ||
| IL_4V7I_028 | No text annotation | ||
| IL_4V7I_029 | Single stack bend | ||
| IL_4V7I_030 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V7I_031 | Single bulged G | ||
| IL_4V7I_032 | C-loop with bulged stacked A's | ||
| IL_4V7I_033 | Isolated non-canonical cWW pair | ||
| IL_4V7I_034 | No text annotation | ||
| IL_4V7I_035 | No text annotation | ||
| IL_4V7I_036 | Isolated non-canonical cWW pair | ||
| IL_4V7I_037 | Single bulged C | ||
| IL_4V7I_038 | UAA/GAN | ||
| IL_4V7I_039 | SSU/LSU pseudoknot | ||
| IL_4V7I_040 | Single bulged U | ||
| IL_4V7I_041 | Kink-turn related | ||
| IL_4V7I_042 | No text annotation | ||
| IL_4V7I_043 | Isolated non-canonical cWW pair | ||
| IL_4V7I_044 | Tandem non-canonical cWW pairs | ||
| IL_4V7I_046 | No text annotation | ||
| IL_4V7I_047 | Major groove platform | ||
| IL_4V7I_048 | Isolated cWS basepair | ||
| IL_4V7I_049 | No text annotation | ||
| IL_4V7I_050 | Kink-turn | ||
| IL_4V7I_051 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V7I_052 | Major groove platform; stack outside cWW | ||
| IL_4V7I_053 | Isolated non-canonical cWW pair | ||
| IL_4V7I_054 | C-loop | ||
| IL_4V7I_055 | UAA/GAN | ||
| IL_4V7I_056 | tSH-tHW-tHS | ||
| IL_4V7I_057 | No text annotation | ||
| IL_4V7I_058 | UAA/GAN | ||
| IL_4V7I_059 | Tandem non-canonical cWW pairs | ||
| IL_4V7I_203 | No text annotation | ||
| IL_4V7I_060 | No text annotation | ||
| IL_4V7I_061 | No text annotation | ||
| IL_4V7I_062 | tSH-tHW-tHS | ||
| IL_4V7I_063 | No text annotation | ||
| IL_4V7I_064 | Single bulged A | ||
| IL_4V7I_065 | UAA/GAN variation | ||
| IL_4V7I_066 | No text annotation | ||
| IL_4V7I_067 | Isolated tWW turn | ||
| IL_4V7I_068 | Major groove platform; stack outside cWW | ||
| IL_4V7I_188 | No text annotation | ||
| IL_4V7I_069 | Intercalated tWH | ||
| IL_4V7I_070 | tSH-tSH-tHH-tHS | ||
| IL_4V7I_071 | No text annotation | ||
| IL_4V7I_189 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V7I_072 | Triple sheared | ||
| IL_4V7I_073 | Single bulged C | ||
| IL_4V7I_190 | Isolated non-canonical cWW pair | ||
| IL_4V7I_074 | Single bulged A | ||
| IL_4V7I_075 | Kink-turn related | ||
| IL_4V7I_076 | Minor groove platform, major groove intercalation | ||
| IL_4V7I_077 | Major groove intercalation | ||
| IL_4V7I_078 | Minor groove platform | ||
| IL_4V7I_191 | No text annotation | ||
| IL_4V7I_079 | UAA/GAN related | ||
| IL_4V7I_080 | Bulged stacked bases | ||
| IL_4V7I_081 | No text annotation | ||
| IL_4V7I_082 | Major groove platform | ||
| IL_4V7I_083 | Major groove platform with intercalation | ||
| IL_4V7I_084 | Single bulged U | ||
| IL_4V7I_085 | Minor groove platform | ||
| IL_4V7I_086 | Isolated tHS basepair with bulges | ||
| IL_4V7I_087 | Isolated non-canonical cWW pair | ||
| IL_4V7I_088 | Isolated non-canonical cWW pair | ||
| IL_4V7I_192 | Other IL | ||
| IL_4V7I_089 | Isolated non-canonical cWW pair | ||
| IL_4V7I_090 | No text annotation | ||
| IL_4V7I_091 | No text annotation | ||
| IL_4V7I_092 | No text annotation | ||
| IL_4V7I_193 | No text annotation | ||
| IL_4V7I_093 | No text annotation | ||
| IL_4V7I_094 | No text annotation | ||
| IL_4V7I_095 | Single bulged U | ||
| IL_4V7I_096 | Double sheared | ||
| IL_4V7I_097 | No text annotation | ||
| IL_4V7I_098 | Single stack bend | ||
| IL_4V7I_099 | Major groove platform | ||
| IL_4V7I_100 | Major groove platform | ||
| IL_4V7I_101 | Major groove minor groove platform with extra cWW | ||
| IL_4V7I_102 | Double sheared with non-canonical cWW | ||
| IL_4V7I_103 | Major groove platform | ||
| IL_4V7I_104 | Isolated non-canonical cWW with bulges | ||
| IL_4V7I_105 | No text annotation | ||
| IL_4V7I_106 | Major groove platform with intercalation | ||
| IL_4V7I_107 | Single bulged A | ||
| IL_4V7I_108 | tSH-tHS-tHW | ||
| IL_4V7I_109 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V7I_194 | No text annotation | ||
| IL_4V7I_110 | C-loop | ||
| IL_4V7I_111 | UAA/GAN related, with intercalation | ||
| IL_4V7I_112 | Multiple bulged bases | ||
| IL_4V7I_113 | UAA/GAN with extra cWW | ||
| IL_4V7I_114 | No text annotation | ||
| IL_4V7I_115 | Major groove intercalation | ||
| IL_4V7I_116 | No text annotation | ||
| IL_4V7I_204 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V7I_117 | tHS double platform | ||
| IL_4V7I_118 | Single bulged G | ||
| IL_4V7I_119 | Single bulged A | ||
| IL_4V7I_120 | No text annotation | ||
| IL_4V7I_195 | No text annotation | ||
| IL_4V7I_121 | No text annotation | ||
| IL_4V7I_122 | Minor groove platform | ||
| IL_4V7I_123 | Multiple bulged bases | ||
| IL_4V7I_124 | Minor groove platform with extra cWW | ||
| IL_4V7I_125 | Minor groove platform | ||
| IL_4V7I_126 | No text annotation | ||
| IL_4V7I_127 | Isolated non-canonical cWW pair | ||
| IL_4V7I_128 | Isolated non-canonical cWW pair | ||
| IL_4V7I_129 | No text annotation | ||
| IL_4V7I_130 | Isolated cWH basepair | ||
| IL_4V7I_131 | tWH-tWH-tHW-tHW | ||
| IL_4V7I_132 | No text annotation | ||
| IL_4V7I_196 | No text annotation | ||
| IL_4V7I_205 | Minor groove platform | ||
| IL_4V7I_133 | Kink-turn with non-sequential stacking | ||
| IL_4V7I_134 | No text annotation | ||
| IL_4V7I_135 | C-loop | ||
| IL_4V7I_136 | Single bulged U | ||
| IL_4V7I_206 | C-loop | ||
| IL_4V7I_137 | C-loop with extra cWW pair | ||
| IL_4V7I_207 | Single bulged G | ||
| IL_4V7I_138 | No text annotation | ||
| IL_4V7I_197 | No text annotation | ||
| IL_4V7I_139 | No text annotation | ||
| IL_4V7I_140 | tSH-tHW-tWW | ||
| IL_4V7I_141 | No text annotation | ||
| IL_4V7I_142 | No text annotation | ||
| IL_4V7I_143 | SSU/LSU pseudoknot | ||
| IL_4V7I_144 | Kink-turn related | ||
| IL_4V7I_145 | No text annotation | ||
| IL_4V7I_146 | tSH-tHW-tHS | ||
| IL_4V7I_147 | Major groove platform | ||
| IL_4V7I_148 | Major groove minor groove platform; mini C-loop | ||
| IL_4V7I_149 | No text annotation | ||
| IL_4V7I_150 | Major groove platform; stack outside cWW | ||
| IL_4V7I_151 | Single stack bend | ||
| IL_4V7I_152 | Tandem non-canonical cWW pairs | ||
| IL_4V7I_153 | No text annotation | ||
| IL_4V7I_198 | Kink-turn | ||
| IL_4V7I_154 | Kink-turn | ||
| IL_4V7I_155 | Left turn | ||
| IL_4V7I_156 | tSH-tHW-tHS | ||
| IL_4V7I_157 | Isolated non-canonical cWW pair | ||
| IL_4V7I_158 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V7I_159 | Single bulged A | ||
| IL_4V7I_160 | Single bulged G | ||
| IL_4V7I_161 | Minor groove platform | ||
| IL_4V7I_199 | No text annotation | ||
| IL_4V7I_162 | Minor groove platform | ||
| IL_4V7I_163 | Minor groove platform | ||
| IL_4V7I_164 | Single stack bend | ||
| IL_4V7I_165 | Single bulged U | ||
| IL_4V7I_166 | Isolated cWS basepair | ||
| IL_4V7I_167 | Minor groove platform | ||
| IL_4V7I_168 | Single bulged A | ||
| IL_4V7I_169 | Isolated non-canonical cWW pair | ||
| IL_4V7I_170 | No text annotation | ||
| IL_4V7I_171 | No text annotation | ||
| IL_4V7I_172 | Minor groove platform | ||
| IL_4V7I_200 | No text annotation | ||
| IL_4V7I_173 | No text annotation | ||
| IL_4V7I_174 | No text annotation | ||
| IL_4V7I_175 | 180 degree turn | ||
| IL_4V7I_176 | Double sheared with non-canonical cWW | ||
| IL_4V7I_177 | No text annotation | ||
| IL_4V7I_178 | No text annotation | ||
| IL_4V7I_179 | No text annotation | ||
| IL_4V7I_180 | Isolated non-canonical cWW pair | ||
| IL_4V7I_181 | Isolated non-canonical cWW pair | ||
| IL_4V7I_182 | Isolated non-canonical cWW pair | ||
| IL_4V7I_183 | Double sheared | ||
| IL_4V7I_184 | Triple sheared related | ||
| IL_4V7I_185 | No text annotation | ||
| IL_4V7I_201 | Single bulged A | ||
| IL_4V7I_186 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V7I_001 | No text annotation | ||
| J3_4V7I_020 | No text annotation | ||
| J3_4V7I_021 | No text annotation | ||
| J3_4V7I_022 | No text annotation | ||
| J3_4V7I_023 | No text annotation | ||
| J3_4V7I_024 | No text annotation | ||
| J3_4V7I_002 | No text annotation | ||
| J3_4V7I_003 | No text annotation | ||
| J3_4V7I_004 | No text annotation | ||
| J3_4V7I_005 | No text annotation | ||
| J3_4V7I_006 | No text annotation | ||
| J3_4V7I_025 | No text annotation | ||
| J3_4V7I_026 | No text annotation | ||
| J3_4V7I_007 | Kink-turn 3-way junction | ||
| J3_4V7I_027 | No text annotation | ||
| J3_4V7I_008 | No text annotation | ||
| J3_4V7I_009 | No text annotation | ||
| J3_4V7I_028 | No text annotation | ||
| J3_4V7I_010 | No text annotation | ||
| J3_4V7I_029 | No text annotation | ||
| J3_4V7I_037 | No text annotation | ||
| J3_4V7I_030 | No text annotation | ||
| J3_4V7I_031 | No text annotation | ||
| J3_4V7I_032 | No text annotation | ||
| J3_4V7I_033 | No text annotation | ||
| J3_4V7I_011 | No text annotation | ||
| J3_4V7I_012 | No text annotation | ||
| J3_4V7I_013 | No text annotation | ||
| J3_4V7I_014 | No text annotation | ||
| J3_4V7I_015 | No text annotation | ||
| J3_4V7I_034 | No text annotation | ||
| J3_4V7I_016 | No text annotation | ||
| J3_4V7I_017 | No text annotation | ||
| J3_4V7I_035 | No text annotation | ||
| J3_4V7I_018 | No text annotation | ||
| J3_4V7I_036 | No text annotation | ||
| J3_4V7I_019 | No text annotation | ||
| J4_4V7I_001 | No text annotation | ||
| J4_4V7I_002 | No text annotation | ||
| J4_4V7I_003 | No text annotation | ||
| J4_4V7I_004 | No text annotation | ||
| J4_4V7I_005 | No text annotation | ||
| J4_4V7I_006 | No text annotation | ||
| J4_4V7I_007 | No text annotation | ||
| J4_4V7I_008 | No text annotation | ||
| J4_4V7I_009 | No text annotation | ||
| J4_4V7I_010 | No text annotation | ||
| J4_4V7I_011 | No text annotation | ||
| J4_4V7I_012 | No text annotation | ||
| J4_4V7I_013 | No text annotation | ||
| J4_4V7I_015 | No text annotation | ||
| J4_4V7I_014 | No text annotation | ||
| J5_4V7I_001 | No text annotation | ||
| J5_4V7I_002 | No text annotation | ||
| J5_4V7I_003 | No text annotation | ||
| J5_4V7I_004 | No text annotation | ||
| J5_4V7I_010 | No text annotation | ||
| J5_4V7I_005 | No text annotation | ||
| J5_4V7I_006 | No text annotation | ||
| J5_4V7I_007 | No text annotation | ||
| J5_4V7I_008 | No text annotation | ||
| J5_4V7I_009 | No text annotation | ||
| J6_4V7I_001 | No text annotation | ||
| J6_4V7I_002 | No text annotation | ||
| J7_4V7I_001 | No text annotation | ||
| J7_4V7I_002 | No text annotation |
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