HL_4V7I_006

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_006 not in the Motif Atlas

Geometric match to HL_5LYS_002

Geometric discrepancy: 0.2175

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V7I|1|A8|U|137
4V7I|1|A8|U|138
4V7I|1|A8|U|139
4V7I|1|A8|C|140
4V7I|1|A8|G|141
4V7I|1|A8|A|142

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AT

50S ribosomal protein L23