HL_4V7I_012

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

4V7I|1|A8|U|321, 4V7I|1|A8|A|322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_012 not in the Motif Atlas

Homologous match to HL_7A0S_011

Geometric discrepancy: 0.2231

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4V7I|1|A8|G|319
4V7I|1|A8|A|320
4V7I|1|A8|U|321
4V7I|1|A8|A|322
4V7I|1|A8|C|323

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AU

50S ribosomal protein L24