HL_4V7I_013

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V7I|1|A8|G|329, 4V7I|1|A8|A|330, 4V7I|1|A8|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_013 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.2881

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4V7I|1|A8|G|327
4V7I|1|A8|U|328
4V7I|1|A8|G|329
4V7I|1|A8|A|330
4V7I|1|A8|C|331
4V7I|1|A8|A|332
4V7I|1|A8|G|333
4V7I|1|A8|C|334
4V7I|1|A8|C|335

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AU

50S ribosomal protein L24