HL_4V7I_030

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_030 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.5714

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7I|1|A8|C|1064
4V7I|1|A8|U|1065
4V7I|1|A8|U|1066
4V7I|1|A8|A|1067
4V7I|1|A8|G|1068
4V7I|1|A8|A|1069
4V7I|1|A8|A|1070
4V7I|1|A8|G|1071
4V7I|1|A8|C|1072
4V7I|1|A8|A|1073
4V7I|1|A8|G|1074

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L11