HL_4V7I_040

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_040 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.4377

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V7I|1|A8|C|1533
4V7I|1|A8|U|1534
4V7I|1|A8|A|1535
4V7I|1|A8|C|1536
4V7I|1|A8|G|1537
4V7I|1|A8|G|1538

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AA

PREPROTEIN TRANSLOCASE SECY SUBUNIT