HL_4V7I_042

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V7I|1|A8|A|1614, 4V7I|1|A8|A|1616, 4V7I|1|A8|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_042 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.3358

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V7I|1|A8|C|1612
4V7I|1|A8|G|1613
4V7I|1|A8|A|1614
4V7I|1|A8|C|1615
4V7I|1|A8|A|1616
4V7I|1|A8|C|1617
4V7I|1|A8|A|1618
4V7I|1|A8|G|1619

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AS

50S ribosomal protein L22