HL_4V7I_057

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_057 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.5408

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V7I|1|A8|G|2303
4V7I|1|A8|G|2304
4V7I|1|A8|U|2305
4V7I|1|A8|C|2306
4V7I|1|A8|G|2307
4V7I|1|A8|G|2308
4V7I|1|A8|A|2309
4V7I|1|A8|C|2310
4V7I|1|A8|A|2311
4V7I|1|A8|U|2312
4V7I|1|A8|C|2313

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L5