HL_4V7I_064

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GCUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_064 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3968

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V7I|1|A8|G|2550
4V7I|1|A8|C|2551
4V7I|1|A8|U|2552
4V7I|1|A8|G|2553
4V7I|1|A8|U|2554
4V7I|1|A8|U|2555
4V7I|1|A8|C|2556
4V7I|1|A8|G|2557
4V7I|1|A8|C|2558

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L14