HL_4V7I_072

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

4V7I|1|BA|U|14

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_072 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.2101

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31940.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V7I|1|BA|U|12
4V7I|1|BA|U|13
4V7I|1|BA|U|14
4V7I|1|BA|G|15
4V7I|1|BA|A|16
4V7I|1|BA|U|17
4V7I|1|BA|C|18
4V7I|1|BA|A|19
4V7I|1|BA|U|20
4V7I|1|BA|G|21
4V7I|1|BA|G|22

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S ribosomal protein S5

Chain BL

30S ribosomal protein S12