HL_4V7J_056

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_056 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0748

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V7J|1|AA|C|2324
4V7J|1|AA|G|2325
4V7J|1|AA|C|2326
4V7J|1|AA|A|2327
4V7J|1|AA|A|2328
4V7J|1|AA|G|2329
4V7J|1|AA|G|2330
4V7J|1|AA|G|2331

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A0

50S ribosomal protein L27

Chain AQ

50S ribosomal protein L16

Chain Av

Transfer RNA; tRNA