4V7J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V7J_001 | 1/AA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V7J_002 | 1/AA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4V7J_003 | 1/AA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4V7J_004 | 1/AA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V7J_005 | 1/AA/154A:171 | No text annotation | ||
| HL_4V7J_006 | 1/AA/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_4V7J_007 | 1/AA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V7J_008 | 1/AA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V7J_009 | 1/AA/271J:271M | No text annotation | homologous HL_7RQB_009 NA | |
| HL_4V7J_217 | 1/AA/271:271 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_4V7J_010 | 1/AA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V7J_011 | 1/AA/319:323 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_4V7J_012 | 1/AA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_4V7J_218 | 1/AA/383:391 | No text annotation | ||
| HL_4V7J_014 | 1/AA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V7J_015 | 1/AA/462:467 | GNRA | homologous HL_5J7L_147 NA | |
| HL_4V7J_016 | 1/AA/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4V7J_017 | 1/AA/543:549 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_4V7J_018 | 1/AA/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4V7J_019 | 1/AA/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V7J_020 | 1/AA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V7J_021 | 1/AA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V7J_022 | 1/AA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V7J_023 | 1/AA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V7J_024 | 1/AA/779:785 | UNCG variation | homologous HL_7A0S_023 HL_51020.1 | |
| HL_4V7J_025 | 1/AA/826:831 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_4V7J_026 | 1/AA/884:892 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_4V7J_027 | 1/AA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V7J_028 | 1/AA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V7J_029 | 1/AA/1042:1113 | No text annotation | ||
| HL_4V7J_239 | 1/AA/1171:1178 | No text annotation | ||
| HL_4V7J_031 | 1/AA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V7J_032 | 1/AA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V7J_033 | 1/AA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V7J_034 | 1/AA/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_4V7J_035 | 1/AA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V7J_036 | 1/AA/1450A:1461 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_4V7J_240 | 1/AA/1492:1498 | No text annotation | ||
| HL_4V7J_038 | 1/AA/1531:1538 | GNRA with extra cWW | geometric HL_4WF9_053 HL_45359.1 | |
| HL_4V7J_039 | 1/AA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_4V7J_040 | 1/AA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V7J_041 | 1/AA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V7J_042 | 1/AA/1691:1696 | UNCG | homologous HL_5J7L_175 NA | |
| HL_4V7J_043 | 1/AA/1719:1743 | No text annotation | homologous HL_5J7L_214 NA | |
| HL_4V7J_044 | 1/AA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V7J_045 | 1/AA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4V7J_046 | 1/AA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V7J_047 | 1/AA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V7J_048 | 1/AA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V7J_049 | 1/AA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V7J_050 | 1/AA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V7J_241 | 1/AA/2144:2147 | No text annotation | ||
| HL_4V7J_052 | 1/AA/2205:2219 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_4V7J_053 | 1/AA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V7J_054 | 1/AA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V7J_242 | 1/AA/2304:2312 | No text annotation | ||
| HL_4V7J_056 | 1/AA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V7J_057 | 1/AA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V7J_058 | 1/AA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V7J_059 | 1/AA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V7J_060 | 1/AA/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_4V7J_061 | 1/AA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V7J_062 | 1/AA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4V7J_063 | 1/AA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V7J_064 | 1/AA/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_4V7J_065 | 1/AA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V7J_066 | 1/AA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V7J_068 | 1/AA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V7J_069 | 1/AA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V7J_221 | 1/AB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_4V7J_070 | 1/AB/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4V7J_071 | 1/AB/86:91 | GNRA | homologous HL_7A0S_070 HL_34789.1 | |
| HL_4V7J_072 | 1/Aa/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_4V7J_073 | 1/Aa/77:92 | No text annotation | ||
| HL_4V7J_074 | 1/Aa/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_4V7J_075 | 1/Aa/189C:189H | No text annotation | homologous HL_4LFB_004 HL_89167.1 | |
| HL_4V7J_222 | 1/Aa/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_90436.1 | |
| HL_4V7J_077 | 1/Aa/259:267 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_4V7J_078 | 1/Aa/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_4V7J_079 | 1/Aa/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_4V7J_080 | 1/Aa/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_4V7J_081 | 1/Aa/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_4V7J_082 | 1/Aa/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_4V7J_083 | 1/Aa/458:473 | GNRA | homologous HL_4LFB_012 HL_34789.1 | |
| HL_4V7J_084 | 1/Aa/522:527 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_4V7J_085 | 1/Aa/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_4V7J_086 | 1/Aa/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_4V7J_087 | 1/Aa/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_4V7J_088 | 1/Aa/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_4V7J_223 | 1/Aa/837:849 | UNCG variation | geometric HL_5J7L_200 NA | |
| HL_4V7J_089 | 1/Aa/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4V7J_090 | 1/Aa/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_4V7J_091 | 1/Aa/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_4V7J_092 | 1/Aa/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4V7J_243 | 1/Aa/1010:1019 | No text annotation | geometric HL_5J7L_212 NA | |
| HL_4V7J_093 | 1/Aa/1012:1017 | GNRA | geometric HL_4LFB_022 HL_34789.1 | |
| HL_4V7J_094 | 1/Aa/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_4V7J_095 | 1/Aa/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_4V7J_244 | 1/Aa/1124:1149 | No text annotation | ||
| HL_4V7J_096 | 1/Aa/1127:1145 | No text annotation | ||
| HL_4V7J_097 | 1/Aa/1165:1171 | GNRA | geometric HL_5XTM_002 NA | |
| HL_4V7J_098 | 1/Aa/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.1 | |
| HL_4V7J_099 | 1/Aa/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4V7J_100 | 1/Aa/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_4V7J_101 | 1/Aa/1445:1457 | UNCG | homologous HL_5J7L_030 NA | |
| HL_4V7J_102 | 1/Aa/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_4V7J_103 | 1/Av/13:22 | tRNA D-loop | homologous HL_4TUE_033 NA | |
| HL_4V7J_104 | 1/Av/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.1 | |
| HL_4V7J_105 | 1/Av/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5HR7_006 HL_33597.1 | |
| HL_4V7J_106 | 1/Aw/13:22 | No text annotation | homologous HL_5EL4_221 NA | |
| HL_4V7J_227 | 1/Aw/30:40 | No text annotation | homologous HL_4WZD_209 NA | |
| HL_4V7J_108 | 1/Aw/53:61 | T-loop with 2 stacked bulged bases | geometric HL_4YCO_003 HL_33597.1 | |
| HL_4V7J_109 | 1/BA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V7J_110 | 1/BA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4V7J_111 | 1/BA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4V7J_112 | 1/BA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V7J_113 | 1/BA/154A:171 | No text annotation | ||
| HL_4V7J_114 | 1/BA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V7J_115 | 1/BA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V7J_116 | 1/BA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V7J_117 | 1/BA/271J:271M | No text annotation | geometric HL_6U8D_003 HL_32346.5 | |
| HL_4V7J_228 | 1/BA/271:271 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_4V7J_118 | 1/BA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V7J_119 | 1/BA/319:323 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_4V7J_120 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4V7J_229 | 1/BA/383:391 | No text annotation | ||
| HL_4V7J_122 | 1/BA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V7J_123 | 1/BA/462:467 | GNRA | homologous HL_5J7L_147 NA | |
| HL_4V7J_124 | 1/BA/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4V7J_125 | 1/BA/543:549 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_4V7J_126 | 1/BA/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4V7J_127 | 1/BA/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V7J_128 | 1/BA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V7J_129 | 1/BA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V7J_130 | 1/BA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V7J_131 | 1/BA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V7J_132 | 1/BA/779:785 | UNCG variation | homologous HL_7A0S_023 HL_51020.1 | |
| HL_4V7J_133 | 1/BA/826:831 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_4V7J_134 | 1/BA/884:892 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_4V7J_135 | 1/BA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V7J_136 | 1/BA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V7J_137 | 1/BA/1042:1113 | No text annotation | ||
| HL_4V7J_245 | 1/BA/1171:1178 | No text annotation | ||
| HL_4V7J_139 | 1/BA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V7J_140 | 1/BA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V7J_141 | 1/BA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V7J_142 | 1/BA/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_4V7J_143 | 1/BA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V7J_144 | 1/BA/1450A:1461 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_4V7J_246 | 1/BA/1492:1498 | No text annotation | ||
| HL_4V7J_146 | 1/BA/1531:1538 | GNRA with extra cWW | geometric HL_4WF9_053 HL_45359.1 | |
| HL_4V7J_147 | 1/BA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_4V7J_148 | 1/BA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V7J_149 | 1/BA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V7J_150 | 1/BA/1691:1696 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_4V7J_151 | 1/BA/1719:1743 | No text annotation | homologous HL_5J7L_214 NA | |
| HL_4V7J_152 | 1/BA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V7J_153 | 1/BA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4V7J_154 | 1/BA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V7J_155 | 1/BA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V7J_156 | 1/BA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V7J_157 | 1/BA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V7J_158 | 1/BA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V7J_247 | 1/BA/2144:2147 | No text annotation | ||
| HL_4V7J_160 | 1/BA/2205:2219 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_4V7J_161 | 1/BA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V7J_162 | 1/BA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V7J_248 | 1/BA/2304:2312 | No text annotation | ||
| HL_4V7J_164 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V7J_165 | 1/BA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V7J_166 | 1/BA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V7J_167 | 1/BA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V7J_168 | 1/BA/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_4V7J_169 | 1/BA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V7J_170 | 1/BA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4V7J_171 | 1/BA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V7J_172 | 1/BA/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_4V7J_173 | 1/BA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V7J_174 | 1/BA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V7J_176 | 1/BA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V7J_177 | 1/BA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V7J_232 | 1/BB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_4V7J_178 | 1/BB/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4V7J_179 | 1/BB/86:91 | GNRA | homologous HL_7A0S_070 HL_34789.1 | |
| HL_4V7J_180 | 1/Ba/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_4V7J_181 | 1/Ba/77:92 | No text annotation | ||
| HL_4V7J_182 | 1/Ba/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_4V7J_183 | 1/Ba/189C:189H | No text annotation | homologous HL_4LFB_004 HL_89167.1 | |
| HL_4V7J_233 | 1/Ba/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_90436.1 | |
| HL_4V7J_185 | 1/Ba/259:267 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_4V7J_186 | 1/Ba/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_4V7J_187 | 1/Ba/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_4V7J_188 | 1/Ba/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_4V7J_189 | 1/Ba/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_4V7J_190 | 1/Ba/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_4V7J_191 | 1/Ba/458:473 | GNRA | homologous HL_4LFB_012 HL_34789.1 | |
| HL_4V7J_192 | 1/Ba/522:527 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_4V7J_193 | 1/Ba/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_4V7J_194 | 1/Ba/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_4V7J_195 | 1/Ba/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_4V7J_196 | 1/Ba/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_4V7J_234 | 1/Ba/837:849 | UNCG variation | geometric HL_5J7L_200 NA | |
| HL_4V7J_197 | 1/Ba/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4V7J_198 | 1/Ba/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_4V7J_199 | 1/Ba/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_4V7J_200 | 1/Ba/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4V7J_249 | 1/Ba/1010:1019 | No text annotation | geometric HL_5J7L_212 NA | |
| HL_4V7J_201 | 1/Ba/1012:1017 | GNRA | geometric HL_4LFB_022 HL_34789.1 | |
| HL_4V7J_202 | 1/Ba/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_4V7J_203 | 1/Ba/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_4V7J_250 | 1/Ba/1124:1149 | No text annotation | ||
| HL_4V7J_204 | 1/Ba/1127:1145 | No text annotation | ||
| HL_4V7J_205 | 1/Ba/1165:1171 | GNRA | geometric HL_5XTM_002 NA | |
| HL_4V7J_206 | 1/Ba/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.1 | |
| HL_4V7J_207 | 1/Ba/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4V7J_208 | 1/Ba/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_4V7J_209 | 1/Ba/1445:1457 | UNCG | homologous HL_5J7L_030 NA | |
| HL_4V7J_210 | 1/Ba/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_4V7J_211 | 1/Bv/13:22 | tRNA D-loop | homologous HL_6CFJ_106 HL_63054.1 | |
| HL_4V7J_212 | 1/Bv/31:39 | tRNA anticodon loop | homologous HL_5E81_212 NA | |
| HL_4V7J_213 | 1/Bv/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.1 | |
| HL_4V7J_214 | 1/Bw/12:23 | No text annotation | homologous HL_1SER_001 NA | |
| HL_4V7J_251 | 1/Bw/31:39 | tRNA anticodon loop | homologous HL_6UGG_005 HL_11974.1 | |
| HL_4V7J_216 | 1/Bw/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3ZGZ_003 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V7J_013 | No text annotation | ||
| HL_4V7J_219 | No text annotation | ||
| HL_4V7J_030 | No text annotation | ||
| HL_4V7J_037 | No text annotation | ||
| HL_4V7J_051 | No text annotation | ||
| HL_4V7J_220 | No text annotation | ||
| HL_4V7J_055 | No text annotation | ||
| HL_4V7J_067 | No text annotation | ||
| HL_4V7J_076 | No text annotation | ||
| HL_4V7J_224 | No text annotation | ||
| HL_4V7J_225 | No text annotation | ||
| HL_4V7J_226 | No text annotation | ||
| HL_4V7J_107 | No text annotation | ||
| HL_4V7J_121 | No text annotation | ||
| HL_4V7J_230 | No text annotation | ||
| HL_4V7J_138 | No text annotation | ||
| HL_4V7J_145 | No text annotation | ||
| HL_4V7J_159 | No text annotation | ||
| HL_4V7J_231 | No text annotation | ||
| HL_4V7J_163 | No text annotation | ||
| HL_4V7J_175 | No text annotation | ||
| HL_4V7J_184 | No text annotation | ||
| HL_4V7J_235 | No text annotation | ||
| HL_4V7J_236 | No text annotation | ||
| HL_4V7J_237 | No text annotation | ||
| HL_4V7J_238 | No text annotation | ||
| HL_4V7J_215 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V7J_001 | 1/AA/24:30, 1/AA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V7J_002 | 1/AA/36:37, 1/AA/442:444 | Single bulged A | homologous IL_7A0S_002 IL_14190.1 | |
| IL_4V7J_003 | 1/AA/42:43, 1/AA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4V7J_004 | 1/AA/81:85, 1/AA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V7J_005 | 1/AA/183:184, 1/AA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V7J_006 | 1/AA/188:194, 1/AA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4V7J_007 | 1/AA/239:245, 1/AA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V7J_008 | 1/AA/271I:271J, 1/AA/271M:271O | Single bulged U | geometric IL_4ZT0_004 NA | |
| IL_4V7J_009 | 1/AA/272D:272E, 1/AA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V7J_394 | 1/AA/272J:278, 1/AA/362:363 | No text annotation | ||
| IL_4V7J_011 | 1/AA/280:284, 1/AA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V7J_012 | 1/AA/288:290, 1/AA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4V7J_013 | 1/AA/293:295, 1/AA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V7J_015 | 1/AA/481:484, 1/AA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V7J_016 | 1/AA/564:566, 1/AA/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4V7J_017 | 1/AA/606:610, 1/AA/618:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_4V7J_018 | 1/AA/672:674, 1/AA/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V7J_019 | 1/AA/674:678, 1/AA/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_73855.1 | |
| IL_4V7J_020 | 1/AA/697:698, 1/AA/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4V7J_021 | 1/AA/702:703, 1/AA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4V7J_022 | 1/AA/703:707, 1/AA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V7J_023 | 1/AA/738:741, 1/AA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V7J_024 | 1/AA/775:777, 1/AA/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_4V7J_025 | 1/AA/837:838, 1/AA/940:942 | Single stack bend | homologous IL_4WF9_028 IL_15011.1 | |
| IL_4V7J_026 | 1/AA/844:846, 1/AA/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_4V7J_366 | 1/AA/844:850, 1/AA/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4V7J_027 | 1/AA/846:850, 1/AA/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4V7J_028 | 1/AA/858:862, 1/AA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4V7J_029 | 1/AA/862:863, 1/AA/913:915 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_4V7J_030 | 1/AA/864:868, 1/AA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V7J_032 | 1/AA/875:879, 1/AA/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_4V7J_367 | 1/AA/875:881, 1/AA/895:902 | No text annotation | ||
| IL_4V7J_033 | 1/AA/880:881, 1/AA/895:897 | Single bulged A | geometric IL_5WWT_001 IL_14190.1 | |
| IL_4V7J_035 | 1/AA/952:954, 1/AA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V7J_036 | 1/AA/994:996, 1/AA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4V7J_037 | 1/AA/998:1002, 1/AA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V7J_038 | 1/AA/1004:1011, 1/AA/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4V7J_039 | 1/AA/1011:1013, 1/AA/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_4V7J_040 | 1/AA/1018:1024, 1/AA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_4V7J_041 | 1/AA/1024:1030, 1/AA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V7J_042 | 1/AA/1031:1034, 1/AA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_4V7J_043 | 1/AA/1196:1198, 1/AA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V7J_044 | 1/AA/1202:1206, 1/AA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V7J_045 | 1/AA/1208:1215, 1/AA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V7J_046 | 1/AA/1219:1221, 1/AA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V7J_047 | 1/AA/1262:1269, 1/AA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V7J_048 | 1/AA/1310:1313, 1/AA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V7J_049 | 1/AA/1319:1323, 1/AA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V7J_050 | 1/AA/1351:1355, 1/AA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V7J_051 | 1/AA/1357:1361, 1/AA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4V7J_052 | 1/AA/1415:1416, 1/AA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V7J_053 | 1/AA/1417:1421, 1/AA/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4V7J_054 | 1/AA/1433:1435, 1/AA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V7J_055 | 1/AA/1437:1440, 1/AA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V7J_056 | 1/AA/1448:1450, 1/AA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V7J_057 | 1/AA/1469:1473, 1/AA/1518:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V7J_059 | 1/AA/1481:1482, 1/AA/1506:1510 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4V7J_061 | 1/AA/1488:1491, 1/AA/1499:1501 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.1 | |
| IL_4V7J_062 | 1/AA/1526:1529, 1/AA/1540:1546 | No text annotation | ||
| IL_4V7J_369 | 1/AA/1526:1531, 1/AA/1538:1546 | No text annotation | ||
| IL_4V7J_063 | 1/AA/1651:1656, 1/AA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V7J_064 | 1/AA/1663:1665, 1/AA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V7J_065 | 1/AA/1666:1669, 1/AA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V7J_370 | 1/AA/1666:1674, 1/AA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_4V7J_066 | 1/AA/1669:1674, 1/AA/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4V7J_067 | 1/AA/1686:1691, 1/AA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4V7J_068 | 1/AA/1770:1771, 1/AA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V7J_069 | 1/AA/1798:1804, 1/AA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V7J_070 | 1/AA/1837:1840, 1/AA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4V7J_071 | 1/AA/1841:1842, 1/AA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_4V7J_072 | 1/AA/1846:1849, 1/AA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V7J_073 | 1/AA/1851:1855, 1/AA/1887:1891 | UAA/GAN with extra stack | homologous IL_4WF9_073 IL_89021.3 | |
| IL_4V7J_074 | 1/AA/1856:1860, 1/AA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V7J_075 | 1/AA/1933:1934, 1/AA/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4V7J_076 | 1/AA/1934:1945, 1/AA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_4V7J_077 | 1/AA/2050:2052, 1/AA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V7J_078 | 1/AA/2054:2057, 1/AA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4V7J_079 | 1/AA/2067:2069, 1/AA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V7J_080 | 1/AA/2070:2071, 1/AA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4V7J_081 | 1/AA/2081:2083, 1/AA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V7J_082 | 1/AA/2085:2087, 1/AA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V7J_083 | 1/AA/2101:2103, 1/AA/2187:2188 | Single stack bend | geometric IL_4C7O_002 NA | |
| IL_4V7J_084 | 1/AA/2103:2105, 1/AA/2184:2187 | No text annotation | geometric IL_9M86_006 IL_32983.1 | |
| IL_4V7J_395 | 1/AA/2108:2121, 1/AA/2177:2181 | No text annotation | ||
| IL_4V7J_086 | 1/AA/2124:2128, 1/AA/2160:2174 | No text annotation | ||
| IL_4V7J_396 | 1/AA/2124:2140, 1/AA/2151:2174 | No text annotation | ||
| IL_4V7J_087 | 1/AA/2129:2137, 1/AA/2154:2159 | No text annotation | ||
| IL_4V7J_090 | 1/AA/2297:2299, 1/AA/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_4V7J_091 | 1/AA/2350:2353, 1/AA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V7J_092 | 1/AA/2401:2403, 1/AA/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_97561.1 | |
| IL_4V7J_093 | 1/AA/2453:2454, 1/AA/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4V7J_094 | 1/AA/2454:2455, 1/AA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V7J_095 | 1/AA/2457:2459, 1/AA/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.7 | |
| IL_4V7J_096 | 1/AA/2459:2461, 1/AA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4V7J_097 | 1/AA/2466:2470, 1/AA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4V7J_098 | 1/AA/2507:2508, 1/AA/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.1 | |
| IL_4V7J_099 | 1/AA/2510:2512, 1/AA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V7J_100 | 1/AA/2512:2513, 1/AA/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_4V7J_101 | 1/AA/2522:2523, 1/AA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4V7J_103 | 1/AA/2591:2592, 1/AA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V7J_104 | 1/AA/2636:2640, 1/AA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V7J_105 | 1/AA/2652:2658, 1/AA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V7J_106 | 1/AA/2680:2684, 1/AA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V7J_107 | 1/AA/2687:2691, 1/AA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V7J_108 | 1/AA/2695:2696, 1/AA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V7J_109 | 1/AA/2737:2742, 1/AA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V7J_110 | 1/AA/2838:2839, 1/AA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V7J_111 | 1/AA/2843:2846, 1/AA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V7J_112 | 1/AA/2847:2852, 1/AA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V7J_113 | 1/AB/17:18, 1/AB/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_4V7J_115 | 1/AB/23:28, 1/AB/56:60 | No text annotation | geometric IL_5J7L_356 NA | |
| IL_4V7J_116 | 1/AB/30:31, 1/AB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4V7J_117 | 1/AB/34:38, 1/AB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V7J_118 | 1/AB/71:79, 1/AB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V7J_120 | 1/Aa/30:32, 1/Aa/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_4V7J_121 | 1/Aa/44:45, 1/Aa/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_4V7J_122 | 1/Aa/47:52, 1/Aa/359:361 | No text annotation | homologous IL_4LFB_003 IL_68149.1 | |
| IL_4V7J_398 | 1/Aa/54:56, 1/Aa/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_4V7J_124 | 1/Aa/63:66, 1/Aa/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V7J_125 | 1/Aa/67:69, 1/Aa/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_4V7J_127 | 1/Aa/129:131, 1/Aa/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_4V7J_128 | 1/Aa/132:136, 1/Aa/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_4V7J_129 | 1/Aa/148:153, 1/Aa/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_4V7J_130 | 1/Aa/186:188, 1/Aa/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.1 | |
| IL_4V7J_131 | 1/Aa/242:247, 1/Aa/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_4V7J_132 | 1/Aa/249:252, 1/Aa/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_4V7J_133 | 1/Aa/292:293, 1/Aa/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_4V7J_134 | 1/Aa/367:369, 1/Aa/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_4V7J_399 | 1/Aa/371:375, 1/Aa/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_4V7J_136 | 1/Aa/375:376, 1/Aa/387:389 | Single bulged G | homologous IL_4LFB_016 IL_28408.1 | |
| IL_4V7J_137 | 1/Aa/409:416, 1/Aa/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_4V7J_138 | 1/Aa/446:450, 1/Aa/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_4V7J_139 | 1/Aa/450:455, 1/Aa/476:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_4V7J_140 | 1/Aa/504:511, 1/Aa/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_4V7J_141 | 1/Aa/515:521, 1/Aa/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V7J_142 | 1/Aa/569:575, 1/Aa/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_4V7J_143 | 1/Aa/580:584, 1/Aa/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_4V7J_144 | 1/Aa/594:596, 1/Aa/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_4V7J_145 | 1/Aa/597:598, 1/Aa/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_4V7J_146 | 1/Aa/605:612, 1/Aa/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_4V7J_147 | 1/Aa/654:655, 1/Aa/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_4V7J_148 | 1/Aa/657:658, 1/Aa/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_4V7J_149 | 1/Aa/662:666, 1/Aa/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_4V7J_374 | 1/Aa/673:677, 1/Aa/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_4V7J_151 | 1/Aa/683:688, 1/Aa/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V7J_152 | 1/Aa/774:778, 1/Aa/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_4V7J_153 | 1/Aa/779:783, 1/Aa/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_4V7J_154 | 1/Aa/887:894, 1/Aa/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_4V7J_155 | 1/Aa/922:923, 1/Aa/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_4V7J_156 | 1/Aa/925:927, 1/Aa/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_4V7J_157 | 1/Aa/933:935, 1/Aa/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_4V7J_159 | 1/Aa/952:954, 1/Aa/1226:1229 | Isolated non-canonical cWW pair | geometric IL_4KYY_002 NA | |
| IL_4V7J_400 | 1/Aa/993:997, 1/Aa/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_61370.1 | |
| IL_4V7J_401 | 1/Aa/1001:1007, 1/Aa/1022:1040 | No text annotation | ||
| IL_4V7J_162 | 1/Aa/1048:1050, 1/Aa/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_4V7J_163 | 1/Aa/1052:1056, 1/Aa/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_4V7J_164 | 1/Aa/1057:1058, 1/Aa/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_4V7J_165 | 1/Aa/1059:1061, 1/Aa/1195:1198 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_4V7J_166 | 1/Aa/1061:1063, 1/Aa/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.1 | |
| IL_4V7J_168 | 1/Aa/1124:1127, 1/Aa/1145:1149 | No text annotation | ||
| IL_4V7J_169 | 1/Aa/1247:1253, 1/Aa/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_4V7J_170 | 1/Aa/1254:1259, 1/Aa/1276:1283 | No text annotation | ||
| IL_4V7J_402 | 1/Aa/1255:1262, 1/Aa/1273:1282 | No text annotation | ||
| IL_4V7J_171 | 1/Aa/1259:1262, 1/Aa/1273:1276 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_4V7J_377 | 1/Aa/1303:1308, 1/Aa/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_4V7J_173 | 1/Aa/1399:1401, 1/Aa/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_4V7J_174 | 1/Aa/1401:1404, 1/Aa/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V7J_175 | 1/Aa/1405:1407, 1/Aa/1494:1496 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_01003.1 | |
| IL_4V7J_176 | 1/Aa/1407:1409, 1/Aa/1491:1494 | Decoding loop related | geometric IL_2ET8_003 IL_55553.1 | |
| IL_4V7J_177 | 1/Aa/1412:1414, 1/Aa/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_4V7J_178 | 1/Aa/1416:1419, 1/Aa/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_4V7J_179 | 1/Aa/1431:1435, 1/Aa/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.6 | |
| IL_4V7J_180 | 1/Aa/1435:1437, 1/Aa/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.1 | |
| IL_4V7J_181 | 1/Aa/1440:1443, 1/Aa/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_93811.1 | |
| IL_4V7J_183 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V7J_184 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_7A0S_002 IL_14190.1 | |
| IL_4V7J_185 | 1/BA/42:43, 1/BA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4V7J_186 | 1/BA/81:85, 1/BA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V7J_187 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V7J_188 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V7J_189 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V7J_190 | 1/BA/271I:271J, 1/BA/271M:271O | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_4V7J_191 | 1/BA/272D:272E, 1/BA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V7J_403 | 1/BA/272J:278, 1/BA/362:363 | No text annotation | ||
| IL_4V7J_193 | 1/BA/280:284, 1/BA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V7J_194 | 1/BA/288:290, 1/BA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4V7J_195 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V7J_197 | 1/BA/481:484, 1/BA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V7J_198 | 1/BA/564:566, 1/BA/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4V7J_199 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_4V7J_200 | 1/BA/672:674, 1/BA/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_4V7J_201 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_73855.1 | |
| IL_4V7J_202 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V7J_203 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4V7J_204 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V7J_205 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V7J_206 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V7J_207 | 1/BA/837:838, 1/BA/940:942 | Single stack bend | homologous IL_4WF9_028 IL_15011.1 | |
| IL_4V7J_208 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_4V7J_380 | 1/BA/844:850, 1/BA/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4V7J_209 | 1/BA/846:850, 1/BA/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4V7J_210 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4V7J_211 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_4V7J_212 | 1/BA/864:868, 1/BA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V7J_213 | 1/BA/870:872, 1/BA/905:907 | Isolated cWS basepair | homologous IL_7RQB_030 NA | |
| IL_4V7J_214 | 1/BA/875:879, 1/BA/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_4V7J_381 | 1/BA/875:881, 1/BA/895:902 | No text annotation | ||
| IL_4V7J_215 | 1/BA/880:881, 1/BA/895:897 | Single bulged A | geometric IL_5WWT_001 IL_14190.1 | |
| IL_4V7J_217 | 1/BA/952:954, 1/BA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V7J_218 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4V7J_219 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V7J_220 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_4V7J_221 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_4V7J_222 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_4V7J_223 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V7J_224 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_4V7J_225 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V7J_226 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V7J_227 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V7J_228 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V7J_229 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V7J_230 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V7J_231 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V7J_232 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V7J_233 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4V7J_234 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V7J_235 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4V7J_236 | 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V7J_237 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V7J_238 | 1/BA/1448:1450, 1/BA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V7J_239 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V7J_241 | 1/BA/1481:1482, 1/BA/1506:1510 | No text annotation | geometric IL_7RQB_061 NA | |
| IL_4V7J_243 | 1/BA/1488:1491, 1/BA/1499:1501 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.1 | |
| IL_4V7J_244 | 1/BA/1526:1529, 1/BA/1540:1546 | No text annotation | ||
| IL_4V7J_383 | 1/BA/1526:1531, 1/BA/1538:1546 | No text annotation | ||
| IL_4V7J_245 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V7J_246 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V7J_247 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V7J_384 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_4V7J_248 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4V7J_249 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4V7J_250 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V7J_251 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V7J_252 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4V7J_253 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_4V7J_254 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V7J_255 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra stack | homologous IL_4WF9_073 IL_89021.3 | |
| IL_4V7J_256 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V7J_257 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_4V7J_258 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_4V7J_259 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V7J_260 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4V7J_261 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V7J_262 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4V7J_263 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V7J_264 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V7J_265 | 1/BA/2101:2103, 1/BA/2187:2188 | Single stack bend | geometric IL_4C7O_002 NA | |
| IL_4V7J_266 | 1/BA/2103:2105, 1/BA/2184:2187 | No text annotation | geometric IL_9M86_006 IL_32983.1 | |
| IL_4V7J_404 | 1/BA/2108:2121, 1/BA/2177:2181 | No text annotation | ||
| IL_4V7J_268 | 1/BA/2124:2128, 1/BA/2160:2174 | No text annotation | ||
| IL_4V7J_405 | 1/BA/2124:2140, 1/BA/2151:2174 | No text annotation | ||
| IL_4V7J_269 | 1/BA/2129:2137, 1/BA/2154:2159 | No text annotation | ||
| IL_4V7J_272 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4V7J_273 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V7J_274 | 1/BA/2401:2403, 1/BA/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_97561.1 | |
| IL_4V7J_275 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4V7J_276 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V7J_277 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.7 | |
| IL_4V7J_278 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4V7J_279 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4V7J_280 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.1 | |
| IL_4V7J_281 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_4V7J_282 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_4V7J_283 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4V7J_285 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V7J_286 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V7J_287 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V7J_288 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V7J_289 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V7J_290 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V7J_291 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V7J_292 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V7J_293 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V7J_294 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V7J_295 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_4V7J_297 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V7J_298 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4V7J_299 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V7J_300 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V7J_302 | 1/Ba/30:32, 1/Ba/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_4V7J_303 | 1/Ba/44:45, 1/Ba/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_4V7J_304 | 1/Ba/47:52, 1/Ba/359:361 | No text annotation | homologous IL_4LFB_003 IL_68149.1 | |
| IL_4V7J_407 | 1/Ba/54:56, 1/Ba/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_4V7J_306 | 1/Ba/63:66, 1/Ba/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V7J_307 | 1/Ba/67:69, 1/Ba/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_4V7J_309 | 1/Ba/129:131, 1/Ba/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_4V7J_310 | 1/Ba/132:136, 1/Ba/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_4V7J_311 | 1/Ba/148:153, 1/Ba/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_4V7J_312 | 1/Ba/186:188, 1/Ba/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.1 | |
| IL_4V7J_313 | 1/Ba/242:247, 1/Ba/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_4V7J_314 | 1/Ba/249:252, 1/Ba/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_4V7J_315 | 1/Ba/292:293, 1/Ba/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_4V7J_316 | 1/Ba/367:369, 1/Ba/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_4V7J_408 | 1/Ba/371:375, 1/Ba/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_4V7J_318 | 1/Ba/375:376, 1/Ba/387:389 | Single bulged G | geometric IL_4LFB_016 IL_28408.1 | |
| IL_4V7J_319 | 1/Ba/409:416, 1/Ba/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_4V7J_320 | 1/Ba/446:450, 1/Ba/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_4V7J_321 | 1/Ba/450:455, 1/Ba/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V7J_322 | 1/Ba/504:511, 1/Ba/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_4V7J_323 | 1/Ba/515:521, 1/Ba/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V7J_324 | 1/Ba/569:575, 1/Ba/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_4V7J_325 | 1/Ba/580:584, 1/Ba/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_4V7J_326 | 1/Ba/594:596, 1/Ba/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_4V7J_327 | 1/Ba/597:598, 1/Ba/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_4V7J_328 | 1/Ba/605:612, 1/Ba/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_4V7J_329 | 1/Ba/654:655, 1/Ba/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_4V7J_330 | 1/Ba/657:658, 1/Ba/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_4V7J_331 | 1/Ba/662:666, 1/Ba/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_4V7J_388 | 1/Ba/673:677, 1/Ba/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_4V7J_333 | 1/Ba/683:688, 1/Ba/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V7J_334 | 1/Ba/774:778, 1/Ba/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_4V7J_335 | 1/Ba/779:783, 1/Ba/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_4V7J_336 | 1/Ba/887:894, 1/Ba/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_4V7J_337 | 1/Ba/922:923, 1/Ba/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_4V7J_338 | 1/Ba/925:927, 1/Ba/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_4V7J_339 | 1/Ba/933:935, 1/Ba/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_4V7J_341 | 1/Ba/952:954, 1/Ba/1226:1229 | Isolated non-canonical cWW pair | geometric IL_4KYY_002 NA | |
| IL_4V7J_409 | 1/Ba/993:997, 1/Ba/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_61370.1 | |
| IL_4V7J_410 | 1/Ba/1001:1007, 1/Ba/1022:1040 | No text annotation | ||
| IL_4V7J_344 | 1/Ba/1048:1050, 1/Ba/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_4V7J_345 | 1/Ba/1052:1056, 1/Ba/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_4V7J_346 | 1/Ba/1057:1058, 1/Ba/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_4V7J_347 | 1/Ba/1060:1061, 1/Ba/1195:1197 | Single bulged U | geometric IL_2PN3_003 IL_97561.1 | |
| IL_4V7J_348 | 1/Ba/1061:1063, 1/Ba/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.1 | |
| IL_4V7J_350 | 1/Ba/1124:1127, 1/Ba/1145:1149 | No text annotation | ||
| IL_4V7J_351 | 1/Ba/1247:1253, 1/Ba/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_4V7J_352 | 1/Ba/1254:1259, 1/Ba/1276:1283 | No text annotation | ||
| IL_4V7J_411 | 1/Ba/1255:1262, 1/Ba/1273:1282 | No text annotation | ||
| IL_4V7J_353 | 1/Ba/1259:1262, 1/Ba/1273:1276 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_4V7J_392 | 1/Ba/1303:1308, 1/Ba/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_4V7J_355 | 1/Ba/1399:1401, 1/Ba/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4V7J_356 | 1/Ba/1401:1404, 1/Ba/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V7J_357 | 1/Ba/1405:1407, 1/Ba/1494:1496 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_01003.1 | |
| IL_4V7J_358 | 1/Ba/1407:1409, 1/Ba/1491:1494 | Decoding loop related | geometric IL_2ET8_003 IL_55553.1 | |
| IL_4V7J_359 | 1/Ba/1412:1414, 1/Ba/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_4V7J_360 | 1/Ba/1416:1419, 1/Ba/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_4V7J_361 | 1/Ba/1431:1435, 1/Ba/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.6 | |
| IL_4V7J_412 | 1/Ba/1435:1437, 1/Ba/1464:1466 | Isolated non-canonical cWW pair | homologous IL_6CZR_171 NA | |
| IL_4V7J_363 | 1/Ba/1440:1443, 1/Ba/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V7J_010 | No text annotation | ||
| IL_4V7J_365 | No text annotation | ||
| IL_4V7J_014 | No text annotation | ||
| IL_4V7J_031 | Isolated cWS basepair | ||
| IL_4V7J_034 | Isolated cWH basepair | ||
| IL_4V7J_058 | Tandem non-canonical cWW pairs | ||
| IL_4V7J_060 | No text annotation | ||
| IL_4V7J_368 | Tandem non-canonical cWW pairs | ||
| IL_4V7J_085 | No text annotation | ||
| IL_4V7J_371 | No text annotation | ||
| IL_4V7J_372 | No text annotation | ||
| IL_4V7J_088 | Isolated non-canonical cWW pair | ||
| IL_4V7J_089 | Isolated non-canonical cWW pair | ||
| IL_4V7J_102 | Isolated non-canonical cWW pair | ||
| IL_4V7J_397 | Isolated cWH basepair | ||
| IL_4V7J_114 | Tandem non-canonical cWW pairs | ||
| IL_4V7J_119 | Isolated non-canonical cWW pair | ||
| IL_4V7J_123 | Minor groove platform with extra cWW | ||
| IL_4V7J_126 | Isolated non-canonical cWW pair | ||
| IL_4V7J_135 | No text annotation | ||
| IL_4V7J_373 | No text annotation | ||
| IL_4V7J_150 | No text annotation | ||
| IL_4V7J_158 | Isolated cWS basepair | ||
| IL_4V7J_375 | No text annotation | ||
| IL_4V7J_160 | No text annotation | ||
| IL_4V7J_161 | Isolated non-canonical cWW pair | ||
| IL_4V7J_167 | Isolated non-canonical cWW pair | ||
| IL_4V7J_376 | No text annotation | ||
| IL_4V7J_172 | No text annotation | ||
| IL_4V7J_182 | Triple non-canonical cWW pairs | ||
| IL_4V7J_378 | Isolated non-canonical cWW pair | ||
| IL_4V7J_192 | No text annotation | ||
| IL_4V7J_379 | No text annotation | ||
| IL_4V7J_196 | No text annotation | ||
| IL_4V7J_216 | Isolated cWH basepair | ||
| IL_4V7J_240 | Tandem non-canonical cWW pairs | ||
| IL_4V7J_242 | No text annotation | ||
| IL_4V7J_382 | Tandem non-canonical cWW pairs | ||
| IL_4V7J_267 | No text annotation | ||
| IL_4V7J_385 | No text annotation | ||
| IL_4V7J_386 | No text annotation | ||
| IL_4V7J_270 | Isolated non-canonical cWW pair | ||
| IL_4V7J_271 | Isolated non-canonical cWW pair | ||
| IL_4V7J_284 | Isolated non-canonical cWW pair | ||
| IL_4V7J_406 | Isolated cWH basepair | ||
| IL_4V7J_296 | Tandem non-canonical cWW pairs | ||
| IL_4V7J_301 | Isolated non-canonical cWW pair | ||
| IL_4V7J_305 | Minor groove platform with extra cWW | ||
| IL_4V7J_308 | Isolated non-canonical cWW pair | ||
| IL_4V7J_317 | No text annotation | ||
| IL_4V7J_387 | No text annotation | ||
| IL_4V7J_332 | No text annotation | ||
| IL_4V7J_340 | Isolated cWS basepair | ||
| IL_4V7J_389 | No text annotation | ||
| IL_4V7J_342 | No text annotation | ||
| IL_4V7J_343 | Isolated non-canonical cWW pair | ||
| IL_4V7J_390 | Isolated non-canonical cWW pair | ||
| IL_4V7J_349 | Isolated non-canonical cWW pair | ||
| IL_4V7J_391 | No text annotation | ||
| IL_4V7J_354 | No text annotation | ||
| IL_4V7J_362 | Tandem non-canonical cWW pairs | ||
| IL_4V7J_364 | Isolated non-canonical cWW pair | ||
| IL_4V7J_393 | Triple non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V7J_033 | 1/AA/30:31, 1/AA/474:481, 1/AA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V7J_034 | 1/AA/30:31, 1/AA/474:484, 1/AA/496:510 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_4V7J_035 | 1/AA/32:35, 1/AA/445:461, 1/AA/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_4V7J_036 | 1/AA/56:57, 1/AA/70:76, 1/AA/110:114 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_4V7J_037 | 1/AA/269:271, 1/AA/271:272, 1/AA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V7J_038 | 1/AA/297:301, 1/AA/316:325, 1/AA/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_4V7J_001 | 1/AA/683:689, 1/AA/773:775, 1/AA/791:794 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_4V7J_002 | 1/AA/698:700, 1/AA/732:736, 1/AA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V7J_003 | 1/AA/1298:1303, 1/AA/1625:1627, 1/AA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V7J_004 | 1/AA/1306:1309, 1/AA/1605:1611, 1/AA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V7J_039 | 1/AA/1344:1350, 1/AA/1381:1385, 1/AA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_4V7J_040 | 1/AA/1424:1429, 1/AA/1564:1565, 1/AA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_4V7J_005 | 1/AA/2091:2093, 1/AA/2196:2200, 1/AA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V7J_041 | 1/AA/2282:2284, 1/AA/2384:2395, 1/AA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_4V7J_006 | 1/AA/2295:2297, 1/AA/2321:2323, 1/AA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V7J_007 | 1/AA/2517:2520, 1/AA/2545:2547, 1/AA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V7J_042 | 1/AA/2814:2815, 1/AA/2831:2836, 1/AA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V7J_043 | 1/AB/11:16, 1/AB/68:69, 1/AB/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_4V7J_044 | 1/Aa/46:47, 1/Aa/361:367, 1/Aa/393:395 | No text annotation | geometric J3_4LFB_010 J3_58657.1 | |
| J3_4V7J_045 | 1/Aa/46:52, 1/Aa/359:367, 1/Aa/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_4V7J_046 | 1/Aa/586:588, 1/Aa/651:654, 1/Aa/754:755 | No text annotation | geometric J3_4LFB_011 J3_01633.1 | |
| J3_4V7J_047 | 1/Aa/586:588, 1/Aa/651:655, 1/Aa/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_4V7J_048 | 1/Aa/672:673, 1/Aa/717:725, 1/Aa/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4V7J_009 | 1/Aa/826:829, 1/Aa/857:861, 1/Aa/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_4V7J_010 | 1/Aa/936:939, 1/Aa/1344:1350, 1/Aa/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_4V7J_049 | 1/Aa/941:946, 1/Aa/1235:1237, 1/Aa/1337:1342 | No text annotation | ||
| J3_4V7J_011 | 1/Aa/943:946, 1/Aa/1235:1237, 1/Aa/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_4V7J_012 | 1/Aa/955:962, 1/Aa/973:984, 1/Aa/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_4V7J_050 | 1/Aa/990:993, 1/Aa/1045:1047, 1/Aa/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_4V7J_074 | 1/Aa/990:997, 1/Aa/1044:1047, 1/Aa/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_4V7J_014 | 1/Aa/1063:1068, 1/Aa/1107:1113, 1/Aa/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_4V7J_051 | 1/Aa/1073:1074, 1/Aa/1083:1087, 1/Aa/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V7J_015 | 1/Aa/1116:1118, 1/Aa/1155:1161, 1/Aa/1175:1184 | No text annotation | geometric J3_4LFB_018 J3_40706.1 | |
| J3_4V7J_016 | 1/Aa/1237:1241, 1/Aa/1296:1303, 1/Aa/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_4V7J_075 | 1/Aw/4:27, 1/Aw/43:53, 1/Aw/61:69 | No text annotation | ||
| J3_4V7J_054 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V7J_055 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_4V7J_056 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_4V7J_057 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_4V7J_058 | 1/BA/269:271, 1/BA/271:272, 1/BA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V7J_059 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_4V7J_017 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_4V7J_018 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V7J_019 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V7J_020 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V7J_060 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_4V7J_061 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_4V7J_021 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V7J_062 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_4V7J_022 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V7J_023 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V7J_063 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V7J_064 | 1/BB/11:16, 1/BB/68:69, 1/BB/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_4V7J_065 | 1/Ba/46:47, 1/Ba/361:367, 1/Ba/393:395 | No text annotation | geometric J3_4LFB_010 J3_58657.1 | |
| J3_4V7J_066 | 1/Ba/46:52, 1/Ba/359:367, 1/Ba/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_4V7J_067 | 1/Ba/586:588, 1/Ba/651:654, 1/Ba/754:755 | No text annotation | geometric J3_4LFB_011 J3_01633.1 | |
| J3_4V7J_068 | 1/Ba/586:588, 1/Ba/651:655, 1/Ba/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_4V7J_069 | 1/Ba/672:673, 1/Ba/717:725, 1/Ba/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4V7J_025 | 1/Ba/826:829, 1/Ba/857:861, 1/Ba/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_4V7J_026 | 1/Ba/936:939, 1/Ba/1344:1350, 1/Ba/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_4V7J_070 | 1/Ba/941:946, 1/Ba/1235:1237, 1/Ba/1337:1342 | No text annotation | ||
| J3_4V7J_027 | 1/Ba/943:946, 1/Ba/1235:1237, 1/Ba/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_4V7J_028 | 1/Ba/955:962, 1/Ba/973:984, 1/Ba/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_4V7J_071 | 1/Ba/990:993, 1/Ba/1045:1047, 1/Ba/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_4V7J_076 | 1/Ba/990:997, 1/Ba/1044:1047, 1/Ba/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_4V7J_030 | 1/Ba/1063:1068, 1/Ba/1107:1113, 1/Ba/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_4V7J_072 | 1/Ba/1073:1074, 1/Ba/1083:1087, 1/Ba/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V7J_031 | 1/Ba/1116:1118, 1/Ba/1155:1161, 1/Ba/1175:1184 | No text annotation | geometric J3_4LFB_018 J3_40706.1 | |
| J3_4V7J_032 | 1/Ba/1237:1241, 1/Ba/1296:1303, 1/Ba/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_4V7J_001 | 1/AA/268:269, 1/AA/370:375, 1/AA/399:406, 1/AA/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_4V7J_002 | 1/AA/297:301, 1/AA/316:319, 1/AA/323:325, 1/AA/337:341 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_4V7J_003 | 1/AA/601:604, 1/AA/624:628, 1/AA/635:638, 1/AA/650:656 | No text annotation | ||
| J4_4V7J_004 | 1/AA/1270:1276, 1/AA/1294:1295, 1/AA/1645:1648, 1/AA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_4V7J_005 | 1/AA/1310:1314, 1/AA/1338:1343, 1/AA/1404:1405, 1/AA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_4V7J_006 | 1/AA/1313:1314, 1/AA/1338:1343, 1/AA/1404:1405, 1/AA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_4V7J_007 | 1/AA/1444:1445, 1/AA/1466:1467, 1/AA/1525:1526, 1/AA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_4V7J_008 | 1/AA/1772:1776, 1/AA/1788:1792, 1/AA/1827:1830, 1/AA/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_4V7J_009 | 1/AA/1833:1835, 1/AA/1905:1906, 1/AA/1924:1933, 1/AA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4V7J_032 | 1/AA/2285:2289, 1/AA/2343:2347, 1/AA/2370:2372, 1/AA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_4V7J_011 | 1/AA/2643:2646, 1/AA/2674:2676, 1/AA/2731:2735, 1/AA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_4V7J_012 | 1/Aa/115:122, 1/Aa/239:240, 1/Aa/286:289, 1/Aa/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_4V7J_013 | 1/Aa/142:144, 1/Aa/178:183, 1/Aa/194:198, 1/Aa/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V7J_014 | 1/Aa/575:577, 1/Aa/764:769, 1/Aa/810:821, 1/Aa/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_4V7J_033 | 1/Av/7:10, 1/Av/25:27, 1/Av/43:49, 1/Av/65:66 | tRNA junction | homologous J4_4TUE_004 NA | |
| J4_4V7J_016 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_4V7J_017 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_4V7J_018 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation | ||
| J4_4V7J_019 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_4V7J_020 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_4V7J_021 | 1/BA/1313:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_4V7J_022 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_4V7J_023 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_4V7J_024 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4V7J_034 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_4V7J_026 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_4V7J_027 | 1/Ba/115:122, 1/Ba/239:240, 1/Ba/286:289, 1/Ba/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_4V7J_028 | 1/Ba/142:144, 1/Ba/178:183, 1/Ba/194:198, 1/Ba/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V7J_029 | 1/Ba/575:577, 1/Ba/764:769, 1/Ba/810:821, 1/Ba/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_4V7J_030 | 1/Bv/7:10, 1/Bv/25:27, 1/Bv/43:49, 1/Bv/65:66 | tRNA junction | homologous J4_4WT8_034 NA | |
| J4_4V7J_035 | 1/Bw/4:10, 1/Bw/25:27, 1/Bw/43:49, 1/Bw/65:69 | No text annotation | ||
| J5_4V7J_001 | 1/AA/47:54, 1/AA/116:121, 1/AA/130:131, 1/AA/148:150, 1/AA/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_4V7J_002 | 1/AA/268:271, 1/AA/271:272, 1/AA/366:375, 1/AA/399:406, 1/AA/421:424 | No text annotation | ||
| J5_4V7J_003 | 1/AA/531:533, 1/AA/560:564, 1/AA/577:579, 1/AA/1261:1262, 1/AA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_4V7J_004 | 1/AA/584:589, 1/AA/668:671, 1/AA/809:812, 1/AA/1195:1196, 1/AA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_4V7J_005 | 1/AA/1674:1682, 1/AA/1706:1707, 1/AA/1751:1752, 1/AA/1756:1764, 1/AA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_4V7J_006 | 1/AA/2057:2064, 1/AA/2446:2453, 1/AA/2500:2507, 1/AA/2582:2588, 1/AA/2606:2611 | No text annotation | ||
| J5_4V7J_007 | 1/AA/2074:2077, 1/AA/2243:2246, 1/AA/2258:2259, 1/AA/2281:2282, 1/AA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_4V7J_008 | 1/Aa/36:39, 1/Aa/403:406, 1/Aa/436:442, 1/Aa/492:500, 1/Aa/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V7J_009 | 1/Aa/58:61, 1/Aa/106:113, 1/Aa/314:316, 1/Aa/337:339, 1/Aa/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_4V7J_010 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_4V7J_011 | 1/BA/268:271, 1/BA/271:272, 1/BA/366:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | ||
| J5_4V7J_012 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_4V7J_013 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_4V7J_014 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_4V7J_015 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2507, 1/BA/2582:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_4V7J_016 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_4V7J_017 | 1/Ba/36:39, 1/Ba/403:406, 1/Ba/436:442, 1/Ba/492:500, 1/Ba/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V7J_018 | 1/Ba/58:61, 1/Ba/106:113, 1/Ba/314:316, 1/Ba/337:339, 1/Ba/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J6_4V7J_001 | 1/AA/44:45, 1/AA/179:183, 1/AA/214:224, 1/AA/231:235, 1/AA/262:266, 1/AA/426:433 | No text annotation | ||
| J6_4V7J_002 | 1/AA/2074:2077, 1/AA/2243:2246, 1/AA/2258:2259, 1/AA/2281:2284, 1/AA/2384:2395, 1/AA/2421:2435 | No text annotation | ||
| J6_4V7J_003 | 1/BA/44:45, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_4V7J_004 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J7_4V7J_001 | 1/AA/817:822, 1/AA/835:836, 1/AA/943:946, 1/AA/971:976, 1/AA/987:991, 1/AA/1163:1164, 1/AA/1185:1190 | No text annotation | ||
| J7_4V7J_002 | 1/BA/817:822, 1/BA/835:836, 1/BA/943:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V7J_008 | No text annotation | ||
| J3_4V7J_013 | No text annotation | ||
| J3_4V7J_052 | No text annotation | ||
| J3_4V7J_053 | No text annotation | ||
| J3_4V7J_024 | No text annotation | ||
| J3_4V7J_029 | No text annotation | ||
| J3_4V7J_073 | No text annotation | ||
| J4_4V7J_010 | No text annotation | ||
| J4_4V7J_015 | No text annotation | ||
| J4_4V7J_025 | No text annotation | ||
| J4_4V7J_031 | No text annotation |
Coloring options: