HL_4V7J_071

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_071 not in the Motif Atlas

Homologous match to HL_7A0S_070

Geometric discrepancy: 0.2435

The information below is about HL_7A0S_070

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V7J|1|AB|G|86
4V7J|1|AB|G|87
4V7J|1|AB|C|88
4V7J|1|AB|G|89
4V7J|1|AB|A|90
4V7J|1|AB|C|91

Current chains

Chain AB

RNA (119-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AQ

50S ribosomal protein L16

Chain AZ

50S ribosomal protein L25