HL_4V7J_072
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7J_072 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0755
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.1
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V7J|1|Aa|U|12
4V7J|1|Aa|U|13
4V7J|1|Aa|U|14
4V7J|1|Aa|G|15
4V7J|1|Aa|A|16
4V7J|1|Aa|U|17
4V7J|1|Aa|C|18
4V7J|1|Aa|C|19
4V7J|1|Aa|U|20
4V7J|1|Aa|G|21
4V7J|1|Aa|G|22
Current chains
- Chain Aa
- RNA (1504-MER)
Nearby chains
- Chain Ae
- 30S ribosomal protein S5
- Chain Al
- 30S ribosomal protein S12
- Chain Ax
- RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')
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