HL_4V7J_106
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 4V7J|1|Aw|G|18, 4V7J|1|Aw|G|19, 4V7J|1|Aw|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7J_106 not in the Motif Atlas
- Homologous match to HL_5EL4_221
- Geometric discrepancy: 0.2528
- The information below is about HL_5EL4_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7J|1|Aw|C|13
4V7J|1|Aw|A|14
4V7J|1|Aw|G|15
4V7J|1|Aw|C|16
4V7J|1|Aw|C|17
4V7J|1|Aw|U|17|||A
4V7J|1|Aw|G|18
4V7J|1|Aw|G|19
4V7J|1|Aw|U|20
4V7J|1|Aw|A|21
4V7J|1|Aw|G|22
Current chains
- Chain Aw
- RNA (77-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AC
- 50S ribosomal protein L1
Coloring options: