HL_4V7J_114

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V7J|1|BA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_114 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.0678

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V7J|1|BA|G|194
4V7J|1|BA|A|195
4V7J|1|BA|A|196
4V7J|1|BA|A|197
4V7J|1|BA|C|198
4V7J|1|BA|A|199
4V7J|1|BA|U|200
4V7J|1|BA|C|201

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BP

50S ribosomal protein L15