HL_4V7J_213

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

G(5MU)UCAAAUC

Length

9 nucleotides

Bulged bases

4V7J|1|Bv|U|55

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_213 not in the Motif Atlas

Homologous match to HL_6CFJ_108

Geometric discrepancy: 0.0913

The information below is about HL_6CFJ_108

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V7J|1|Bv|G|53
4V7J|1|Bv|5MU|54
4V7J|1|Bv|U|55
4V7J|1|Bv|C|56
4V7J|1|Bv|A|57
4V7J|1|Bv|A|58
4V7J|1|Bv|A|59
4V7J|1|Bv|U|60
4V7J|1|Bv|C|61

Current chains

Chain Bv

RNA (77-MER)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5

Chain BQ

50S ribosomal protein L16