HL_4V7J_223

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V7J|1|Aa|U|839, 4V7J|1|Aa|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_223 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3809

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7J|1|Aa|G|837
4V7J|1|Aa|G|838
4V7J|1|Aa|U|839
4V7J|1|Aa|C|840
4V7J|1|Aa|U|841
4V7J|1|Aa|C|848
4V7J|1|Aa|C|849

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ar

30S ribosomal protein S18