HL_4V7K_043

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V7K|1|AA|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_043 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.0845

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

4V7K|1|AA|C|1691
4V7K|1|AA|U|1692
4V7K|1|AA|U|1693
4V7K|1|AA|C|1694
4V7K|1|AA|G|1695
4V7K|1|AA|G|1696

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AD

50S ribosomal protein L2

Chain Aa

Small subunit ribosomal RNA; SSU rRNA