Motif HL_03562.2 Version HL_03562.2 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-4
1	HL_4V9F_005	4V9F	0.6523	2		0	LSU rRNA	C	136	U	137	C	139	G	140	G	142	cWW	tSW
2	HL_5J7L_025	5J7L	0.5093	2		AA	SSU rRNA	G	1134	U	1135	C	1137	G	1138	C	1140	ncWW	ntSW
3	HL_4LFB_026	4LFB	0.4972	2		A	SSU rRNA	G	1134	U	1135	C	1137	G	1138	C	1140	cWW	tSW
4	HL_3V7E_002	3V7E	0.4479	1	UNCG variation	C	SAM-I riboswitch	C	65	U	66	C	68	G	69	G	70	cWW
5	HL_7MLW_002	7MLW	0.3308	1	UNCG	F	Guanidine-I riboswitch	G	80	U	81	C	83	G	84	C	85	ncWW	tSWa
6	HL_5J7L_005	5J7L	0.3967	1	UNCG	AA	SSU rRNA	C	207	U	208	C	210	G	211	G	212	cWW	ntSW
7	HL_6CZR_082	6CZR	0.3085	1		1a	SSU rRNA	C	415	U	416	C	418	G	419	G	420	cWW	tSW
8	HL_8SP9_003	8SP9	0.2389	1	UNCG	C	Enterovirus 5' cloverleaf cis-acting replication element	U	90	C	91	C	93	G	94	G	95	cWW	tSWa
9	HL_7A0S_042	7A0S	0.1935	1	UNCG	X	LSU rRNA	C	1708	U	1709	C	1711	G	1712	G	1713	cWW	tSW
10	HL_4WF9_040	4WF9	0.2028	1	UNCG	X	LSU rRNA	C	1735	U	1736	C	1738	G	1739	G	1740	cWW	tSW
11	HL_5J7L_009	5J7L	0.1796	1	UNCG	AA	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
12	HL_5TBW_043	5TBW	0.1915	1	UNCG	1	LSU rRNA	C	1923	U	1924	C	1926	G	1927	G	1928	cWW	tSW
13	HL_8C3A_043	8C3A	0.1667	1	UNCG	1	LSU rRNA	C	1919	U	1920	C	1922	G	1923	G	1924	cWW	tSW
14	HL_4V88_196	4V88	0.1614	1	UNCG	A6	SSU rRNA	C	414	C	415	A	417	G	418	G	419	cWW	tSW
15	HL_6CZR_080	6CZR	0.1634	1	UNCG	1a	SSU rRNA	C	338	U	339	C	341	G	342	G	343	cWW	tSW
16	HL_7RQB_042	7RQB	0.1509	1	UNCG (H)	1A	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
17	HL_5J7L_175	5J7L	0.1289	1	UNCG	DA	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
18	HL_4LFB_011	4LFB	0.1333	1	UNCG	A	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
19	HL_5J7L_011	5J7L	0.1409	1	UNCG	AA	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
20	HL_5J7L_030	5J7L	0.1489	1	UNCG	AA	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
21	HL_6SY6_001	6SY6	0.1147	1	UNCG	D	RNA (36-MER)	C	19	U	20	C	22	G	23	G	24	cWW	tSW
22	HL_5Y85_004	5Y85	0.1102	1	UNCG	D	DNA/RNA (50-MER)	C	28	U	29	C	31	G	32	G	33	cWW	tSW
23	HL_5LYS_002	5LYS	0.1002	1	UNCG	B	7SK RNA	C	48	U	48\|\|\|A	C	48\|\|\|C	G	48\|\|\|D	G	60	cWW	tSW
24	HL_4JF2_003	4JF2	0.1041	1	UNCG	A	PreQ1-II Riboswitch	C	60	U	61	C	63	G	64	G	65	cWW	tSW
25	HL_5D5L_003	5D5L	0.1042	1	UNCG	A	PreQ1-II riboswitch	C	60	U	61	C	63	G	64	G	65	cWW	tSW
26	HL_4PDB_001	4PDB	0.0988	1	UNCG	I	SELEX RNA aptamer	C	17	U	18	C	20	G	21	G	22	cWW	tSW
27	HL_6QN3_001	6QN3	0.0969	1	UNCG	A	Glutamine-II	C	9	U	10	C	12	G	13	G	14	cWW	tSW
28	HL_4LFB_031	4LFB	0.1272	1	UNCG	A	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
29	HL_7KKV_002	7KKV	0.0780	1	UNCG	B	OLE* RNA	C	517	U	518	C	520	G	521	G	522	cWW	tSW
30	HL_8F5G_001	8F5G	0.0796	1	UNCG	D	RNA	C	12	U	13	C	15	G	16	G	17	cWW	tSW
31	HL_1UN6_003	1UN6	0.0000	1	UNCG	F	5S RIBOSOMAL RNA	C	15	U	16	C	18	G	19	G	64	cWW	tSW
32	HL_4AY2_001	4AY2	0.0936	1	UNCG	C	5'-R-PPP(GPGPCPGPCPGPGPCPUPUPCPGPGPCP CPGPCPGPCP*C)-3'	C	8	U	9	C	11	G	12	G	13	cWW	tSW
33	HL_6QN3_003	6QN3	0.0979	1	UNCG	B	Glutamine-II	C	9	U	10	C	12	G	13	G	14	cWW	tSW
34	HL_8ID2_001	8ID2	0.1132	1	UNCG	C	RNA (24-mer)	G	10	U	11	C	13	G	14	C	15	cWW	tSW
35	HL_4V9F_044	4V9F	0.1226	1	UNCG	0	LSU rRNA	C	1769	U	1770	C	1772	G	1773	G	1774	cWW	tSW
36	HL_4LFB_009	4LFB	0.1498	1	UNCG	A	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
37	HL_8C3A_202	8C3A	0.1278	1	UNCG	CM	SSU rRNA	C	412	C	413	A	415	G	416	G	417	cWW	tSW
38	HL_3IGI_008	3IGI	0.1912	1	UNCG	A	Group IIC intron	G	338	U	339	C	341	G	342	C	343	cWW	tSW
39	HL_1KUQ_001	1KUQ	0.1517	1	UNCG	B	16S RIBOSOMAL RNA FRAGMENT	C	8	U	9	C	11	G	12	G	13	cWW	tSW
40	HL_7L0Z_001	7L0Z	0.1397	1	UNCG	G	RNA (69-MER)	G	30	U	31	C	33	G	34	C	35	cWW	tSW
41	HL_8T29_002	8T29	0.1306	1	UNCG	R	RNA (90-MER)	C	58	U	59	C	61	G	62	G	63	cWW	tSW
42	HL_5J7L_171	5J7L	0.2049	1	UNCG	DA	LSU rRNA	C	1533	U	1534	C	1536	G	1537	G	1538	cWW	tSW
43	HL_6CK5_001	6CK5	0.1965	1	UNCG	A	Guanidine-I riboswitch	A	27	U	28	U	30	G	31	U	32	cWW	tSW
44	HL_3U4M_001	3U4M	0.1392	1	UNCG	B	LSU rRNA	C	2143	U	2144	C	2146	G	2147	G	2148	cWW	tSW
45	HL_2HW8_001	2HW8	0.1231	1	UNCG	B	36-MER	C	15	U	16	C	18	G	19	G	20	cWW	tSW
46	HL_6DLR_002	6DLR	0.1836	1	UNCG	A	Guanidine-I riboswitch	A	61	U	62	C	64	G	65	U	66	cWW	tSW
47	HL_6KYV_004	6KYV	0.2142	1	UNCG	G	RNA (22-mer)	C	9	U	10	C	12	G	13	G	14	cWW	tSW
48	HL_4PMI_004	4PMI	0.1725	1	UNCG	A	Rev-Response-Element RNA	C	53	U	54	C	56	G	57	G	58	cWW	tSW
49	HL_7OAX_001	7OAX	0.1579	1	UNCG	A	Chili RNA Aptamer	G	21	U	22	C	24	G	25	C	26	cWW	tSW
50	HL_1I6U_001	1I6U	0.2182	1	UNCG	C	16S RRNA FRAGMENT	C	16	U	17	C	19	G	20	G	21	cWW	tSW
51	HL_1NBS_006	1NBS	0.2548	1	UNCG	B	RNase P class B	C	152	U	153	C	155	G	156	G	157	cWW	tSW
52	HL_6JQ6_004	6JQ6	0.3011	1	UNCG	U	Hatchet ribozyme	C	45	U	46	C	48	G	49	G	50	cWW
53	HL_1P6V_001	1P6V	0.4229	1	UNCG variation	B	45-MER	C	26	U	27	C	29	G	30	G	31	cWW
54	HL_6DME_002	6DME	0.2924	1	UNCG	A	ppGpp Riboswitch	C	57	U	58	C	60	G	61	G	62	cWW
55	HL_5ML7_002	5ML7	0.3419	1	UNCG	B	23S ribosomal RNA	C	2187	G	2188	U	2190	A	2191	G	2192	cWW
56	HL_4LGT_001	4LGT	0.2905	1	UNCG	E	stem-loop of 23S rRNA	C	2594	G	2595	G	2597	A	2598	G	2599	cWW	tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUCGG	34
CUACGG	6
GUUCGC	4
CCAAGG	2
CUUCGCG	1
GUCCGGC	1
GUUCGGC	1
UCACGG	1
GUACGC	1
AUUUGU	1
CUCCGG	1
AUUCGU	1
CGCUAG	1
CGUGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCG	39
UACG	7
CAAG	2
UUCGC	1
UCCGG	1
UUCGG	1
CACG	1
UUUG	1
UCCG	1
GCUA	1
GUGA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UNCG (49)
(4)
UNCG variation (2)
UNCG (H) (1)
Basepair signature: cWW-tSW-F
Heat map statistics: Min 0.06 | Avg 0.25 | Max 0.79

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