HL_4V7K_044

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUGAUGAGCC

Length

11 nucleotides

Bulged bases

4V7K|1|AA|U|1739, 4V7K|1|AA|G|1740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_044 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3702

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V7K|1|AA|G|1718
4V7K|1|AA|G|1719
4V7K|1|AA|U|1720
4V7K|1|AA|G|1721
4V7K|1|AA|A|1722
4V7K|1|AA|U|1739
4V7K|1|AA|G|1740
4V7K|1|AA|A|1741
4V7K|1|AA|G|1742
4V7K|1|AA|C|1743
4V7K|1|AA|C|1744

Current chains

Chain AA

RNA (2848-MER)

Nearby chains