HL_4V7K_079

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_079 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.0756

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V7K|1|Aa|U|296
4V7K|1|Aa|G|297
4V7K|1|Aa|A|298
4V7K|1|Aa|G|299
4V7K|1|Aa|A|300
4V7K|1|Aa|G|301

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Ae

30S ribosomal protein S5

Chain Al

30S ribosomal protein S12

Chain Aq

30S ribosomal protein S17