HL_4V7K_113

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_113 not in the Motif Atlas

Homologous match to HL_7RQB_004

Geometric discrepancy: 0.2626

The information below is about HL_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79921.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

15

Unit IDs

4V7K|1|BA|G|139
4V7K|1|BA|G|139|||A
4V7K|1|BA|G|140
4V7K|1|BA|A|141
4V7K|1|BA|A|142
4V7K|1|BA|C|142|||A

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain B2

50S ribosomal protein L29

Chain BX

50S ribosomal protein L23