HL_4V7K_148

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGUACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_148 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.3544

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7K|1|BA|C|1531
4V7K|1|BA|C|1532
4V7K|1|BA|G|1533
4V7K|1|BA|U|1534
4V7K|1|BA|A|1535
4V7K|1|BA|C|1536
4V7K|1|BA|G|1537
4V7K|1|BA|G|1538

Current chains

Chain BA

RNA (2848-MER)

Nearby chains